Strain Fitness in Variovorax sp. SCN45 around GFF5975

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5973 and GFF5974 are separated by 118 nucleotidesGFF5974 and GFF5975 are separated by 10 nucleotidesGFF5975 and GFF5976 are separated by 226 nucleotides GFF5973 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 27,675 to 29,912 GFF5973 GFF5974 - hypothetical protein, at 30,031 to 30,378 GFF5974 GFF5975 - Two-component transcriptional response regulator, LuxR family, at 30,389 to 30,964 GFF5975 GFF5976 - Transcriptional regulator, AraC family, at 31,191 to 32,201 GFF5976 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 29.415 kb on + strand, within GFF5973at 29.416 kb on - strand, within GFF5973at 29.416 kb on - strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.826 kb on + strandat 29.827 kb on - strandat 29.829 kb on + strandat 29.829 kb on + strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 30.037 kb on + strandat 30.037 kb on + strandat 30.037 kb on + strandat 30.037 kb on + strandat 30.038 kb on + strandat 30.038 kb on - strandat 30.038 kb on - strandat 30.238 kb on + strand, within GFF5974at 30.239 kb on - strand, within GFF5974at 30.239 kb on - strand, within GFF5974at 30.377 kb on - strandat 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.755 kb on - strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 31.062 kb on + strandat 31.062 kb on + strandat 31.063 kb on - strandat 31.063 kb on - strandat 31.207 kb on + strandat 31.207 kb on + strandat 31.207 kb on + strandat 31.208 kb on - strandat 31.208 kb on - strandat 31.383 kb on + strand, within GFF5976at 31.383 kb on + strand, within GFF5976at 31.902 kb on + strand, within GFF5976at 31.902 kb on + strand, within GFF5976at 31.903 kb on - strand, within GFF5976at 31.903 kb on - strand, within GFF5976

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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29,415 + GFF5973 0.78 -1.5
29,416 - GFF5973 0.78 -0.1
29,416 - GFF5973 0.78 -1.2
29,667 + GFF5973 0.89 -0.6
29,667 + GFF5973 0.89 -0.3
29,667 + GFF5973 0.89 +0.1
29,667 + GFF5973 0.89 -0.8
29,667 + GFF5973 0.89 -1.1
29,668 - GFF5973 0.89 -0.8
29,668 - GFF5973 0.89 -0.5
29,668 - GFF5973 0.89 -1.3
29,668 - GFF5973 0.89 +0.3
29,668 - GFF5973 0.89 +0.5
29,679 + GFF5973 0.90 +1.1
29,679 + GFF5973 0.90 +0.3
29,679 + GFF5973 0.90 +0.9
29,679 + GFF5973 0.90 -0.2
29,679 + GFF5973 0.90 -1.4
29,679 + GFF5973 0.90 -0.2
29,680 - GFF5973 0.90 +0.3
29,680 - GFF5973 0.90 -0.8
29,680 - GFF5973 0.90 -0.7
29,680 - GFF5973 0.90 -1.3
29,680 - GFF5973 0.90 -0.1
29,680 - GFF5973 0.90 +0.4
29,680 - GFF5973 0.90 -2.1
29,680 - GFF5973 0.90 -0.7
29,680 - GFF5973 0.90 +0.5
29,826 + +0.6
29,827 - +0.9
29,829 + -0.6
29,829 + +0.3
29,830 - +0.9
29,830 - -1.1
29,830 - -0.4
29,830 - -0.6
29,830 - -0.6
29,991 + -1.7
29,991 + +0.6
29,991 + -0.3
29,991 + -0.5
29,991 + -0.1
29,991 + -0.0
29,991 + -1.0
29,991 + -0.0
29,991 + -0.1
29,992 - +0.3
29,992 - -0.1
29,992 - -0.3
29,992 - -0.5
29,992 - +0.1
29,992 - +1.9
29,992 - -0.1
30,037 + -1.1
30,037 + +0.6
30,037 + -1.3
30,037 + -0.2
30,038 + +1.2
30,038 - +1.2
30,038 - -1.5
30,238 + GFF5974 0.59 -0.4
30,239 - GFF5974 0.60 -0.7
30,239 - GFF5974 0.60 -1.2
30,377 - +0.5
30,480 + GFF5975 0.16 -0.5
30,480 + GFF5975 0.16 +0.2
30,480 + GFF5975 0.16 -0.4
30,480 + GFF5975 0.16 +0.8
30,481 - GFF5975 0.16 +1.2
30,481 - GFF5975 0.16 +1.0
30,481 - GFF5975 0.16 +1.3
30,523 - GFF5975 0.23 +0.2
30,523 - GFF5975 0.23 +0.9
30,523 - GFF5975 0.23 -0.3
30,523 - GFF5975 0.23 +0.2
30,755 - GFF5975 0.64 +0.3
30,855 + GFF5975 0.81 +0.8
30,855 + GFF5975 0.81 -0.3
30,855 + GFF5975 0.81 +0.0
30,855 + GFF5975 0.81 +0.9
30,855 + GFF5975 0.81 +0.3
30,855 + GFF5975 0.81 +2.5
30,855 + GFF5975 0.81 -0.4
30,855 + GFF5975 0.81 +0.3
30,855 + GFF5975 0.81 -0.2
30,855 + GFF5975 0.81 -0.6
30,855 + GFF5975 0.81 -0.2
30,855 + GFF5975 0.81 -2.0
30,855 + GFF5975 0.81 -0.8
30,855 + GFF5975 0.81 -1.1
30,856 - GFF5975 0.81 -0.7
30,856 - GFF5975 0.81 +0.5
30,856 - GFF5975 0.81 -0.5
31,062 + -0.1
31,062 + +0.2
31,063 - -0.1
31,063 - -0.5
31,207 + -0.1
31,207 + -1.1
31,207 + -1.1
31,208 - -0.2
31,208 - -1.1
31,383 + GFF5976 0.19 +0.0
31,383 + GFF5976 0.19 -0.5
31,902 + GFF5976 0.70 -0.9
31,902 + GFF5976 0.70 -0.5
31,903 - GFF5976 0.70 +0.5
31,903 - GFF5976 0.70 +0.1

Or see this region's nucleotide sequence