Strain Fitness in Variovorax sp. SCN45 around GFF5777

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5775 and GFF5776 overlap by 41 nucleotidesGFF5776 and GFF5777 are separated by 4 nucleotidesGFF5777 and GFF5778 are separated by 154 nucleotides GFF5775 - Glucoamylase (EC 3.2.1.3), at 149,391 to 151,298 GFF5775 GFF5776 - Gluconokinase (EC 2.7.1.12), at 151,258 to 151,803 GFF5776 GFF5777 - 5-keto-D-gluconate 5-reductase (EC 1.1.1.69), at 151,808 to 152,569 GFF5777 GFF5778 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 152,724 to 153,677 GFF5778 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 150.810 kb on + strand, within GFF5775at 150.813 kb on + strand, within GFF5775at 150.813 kb on + strand, within GFF5775at 150.814 kb on - strand, within GFF5775at 150.928 kb on - strand, within GFF5775at 150.942 kb on + strand, within GFF5775at 150.942 kb on + strand, within GFF5775at 151.029 kb on + strand, within GFF5775at 151.029 kb on + strand, within GFF5775at 151.029 kb on + strand, within GFF5775at 151.029 kb on + strand, within GFF5775at 151.029 kb on + strand, within GFF5775at 151.029 kb on + strand, within GFF5775at 151.030 kb on - strand, within GFF5775at 151.030 kb on - strand, within GFF5775at 151.030 kb on - strand, within GFF5775at 151.119 kb on + strandat 151.120 kb on - strandat 151.120 kb on - strandat 151.120 kb on - strandat 151.357 kb on + strand, within GFF5776at 151.357 kb on + strand, within GFF5776at 151.358 kb on - strand, within GFF5776at 151.358 kb on - strand, within GFF5776at 151.358 kb on - strand, within GFF5776at 151.408 kb on + strand, within GFF5776at 151.427 kb on + strand, within GFF5776at 151.427 kb on + strand, within GFF5776at 151.427 kb on + strand, within GFF5776at 151.427 kb on + strand, within GFF5776at 151.427 kb on + strand, within GFF5776at 151.428 kb on - strand, within GFF5776at 151.428 kb on - strand, within GFF5776at 151.809 kb on + strandat 151.810 kb on - strandat 151.810 kb on - strandat 151.839 kb on + strandat 151.839 kb on + strandat 151.839 kb on + strandat 151.839 kb on + strandat 151.840 kb on - strandat 151.840 kb on - strandat 151.840 kb on - strandat 151.846 kb on + strandat 152.004 kb on + strand, within GFF5777at 152.005 kb on - strand, within GFF5777at 152.005 kb on - strand, within GFF5777at 152.037 kb on + strand, within GFF5777at 152.038 kb on - strand, within GFF5777at 152.038 kb on - strand, within GFF5777at 152.038 kb on - strand, within GFF5777at 152.038 kb on - strand, within GFF5777at 152.101 kb on - strand, within GFF5777at 152.101 kb on - strand, within GFF5777at 152.667 kb on + strandat 152.667 kb on + strandat 152.668 kb on - strandat 152.668 kb on - strandat 152.668 kb on - strandat 152.668 kb on - strandat 152.668 kb on - strandat 152.770 kb on - strandat 152.770 kb on - strandat 152.805 kb on + strandat 152.805 kb on + strandat 152.806 kb on - strandat 152.806 kb on - strandat 152.806 kb on - strandat 152.806 kb on - strandat 152.955 kb on + strand, within GFF5778at 152.956 kb on - strand, within GFF5778at 152.956 kb on - strand, within GFF5778

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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150,810 + GFF5775 0.74 +0.0
150,813 + GFF5775 0.75 +0.0
150,813 + GFF5775 0.75 -0.1
150,814 - GFF5775 0.75 +0.9
150,928 - GFF5775 0.81 -1.7
150,942 + GFF5775 0.81 +1.0
150,942 + GFF5775 0.81 -0.6
151,029 + GFF5775 0.86 -0.3
151,029 + GFF5775 0.86 -0.5
151,029 + GFF5775 0.86 -0.3
151,029 + GFF5775 0.86 +0.9
151,029 + GFF5775 0.86 -0.7
151,029 + GFF5775 0.86 +0.9
151,030 - GFF5775 0.86 -1.1
151,030 - GFF5775 0.86 -1.2
151,030 - GFF5775 0.86 +0.4
151,119 + -0.6
151,120 - -0.7
151,120 - +0.7
151,120 - +0.2
151,357 + GFF5776 0.18 +1.2
151,357 + GFF5776 0.18 -0.5
151,358 - GFF5776 0.18 +0.0
151,358 - GFF5776 0.18 +0.0
151,358 - GFF5776 0.18 -0.8
151,408 + GFF5776 0.27 -0.6
151,427 + GFF5776 0.31 +0.7
151,427 + GFF5776 0.31 +0.2
151,427 + GFF5776 0.31 +0.6
151,427 + GFF5776 0.31 -0.2
151,427 + GFF5776 0.31 -0.2
151,428 - GFF5776 0.31 +0.4
151,428 - GFF5776 0.31 -0.4
151,809 + -0.0
151,810 - -0.3
151,810 - +0.1
151,839 + +1.6
151,839 + +1.0
151,839 + +0.3
151,839 + -1.0
151,840 - -0.7
151,840 - -0.3
151,840 - +0.6
151,846 + -0.2
152,004 + GFF5777 0.26 -1.1
152,005 - GFF5777 0.26 -3.3
152,005 - GFF5777 0.26 -0.3
152,037 + GFF5777 0.30 -0.4
152,038 - GFF5777 0.30 -0.7
152,038 - GFF5777 0.30 -0.2
152,038 - GFF5777 0.30 -1.1
152,038 - GFF5777 0.30 -0.7
152,101 - GFF5777 0.38 +0.1
152,101 - GFF5777 0.38 +0.8
152,667 + +1.1
152,667 + +0.7
152,668 - -0.7
152,668 - +0.0
152,668 - +0.6
152,668 - -0.4
152,668 - -0.1
152,770 - +0.7
152,770 - -0.2
152,805 + -0.3
152,805 + +0.4
152,806 - -0.8
152,806 - -0.3
152,806 - +0.5
152,806 - +0.4
152,955 + GFF5778 0.24 -1.9
152,956 - GFF5778 0.24 +0.8
152,956 - GFF5778 0.24 -0.5

Or see this region's nucleotide sequence