Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5686 and GFF5687 overlap by 8 nucleotides GFF5687 and GFF5688 are separated by 115 nucleotides GFF5688 and GFF5689 overlap by 25 nucleotides GFF5689 and GFF5690 overlap by 4 nucleotides
GFF5686 - FIG01027227: hypothetical protein, at 62,361 to 62,759
GFF5686
GFF5687 - FIG01027591: hypothetical protein, at 62,752 to 63,306
GFF5687
GFF5688 - Transcriptional regulator, LysR family, at 63,422 to 64,345
GFF5688
GFF5689 - Oxidoreductase, 2OG-Fe(II) oxygenase family, at 64,321 to 65,322
GFF5689
GFF5690 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 65,319 to 66,062
GFF5690
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 62.449 kb on + strand, within GFF5686 at 62.710 kb on + strand, within GFF5686 at 62.710 kb on + strand, within GFF5686 at 62.711 kb on - strand, within GFF5686 at 62.711 kb on - strand, within GFF5686 at 62.711 kb on - strand, within GFF5686 at 62.810 kb on + strand, within GFF5687 at 63.032 kb on + strand, within GFF5687 at 63.032 kb on + strand, within GFF5687 at 63.032 kb on + strand, within GFF5687 at 63.032 kb on + strand, within GFF5687 at 63.033 kb on - strand, within GFF5687 at 63.033 kb on - strand, within GFF5687 at 63.359 kb on + strand at 63.359 kb on + strand at 63.359 kb on + strand at 63.360 kb on - strand at 63.360 kb on - strand at 63.360 kb on - strand at 63.360 kb on - strand at 63.360 kb on - strand at 63.534 kb on - strand, within GFF5688 at 63.728 kb on + strand, within GFF5688 at 63.728 kb on + strand, within GFF5688 at 63.728 kb on + strand, within GFF5688 at 63.729 kb on - strand, within GFF5688 at 63.729 kb on - strand, within GFF5688 at 63.729 kb on - strand, within GFF5688 at 63.729 kb on - strand, within GFF5688 at 64.376 kb on + strand at 64.376 kb on + strand at 64.376 kb on + strand at 64.376 kb on + strand at 64.376 kb on + strand at 64.377 kb on - strand at 64.377 kb on - strand at 64.377 kb on - strand at 64.572 kb on - strand, within GFF5689 at 64.572 kb on - strand, within GFF5689 at 64.572 kb on - strand, within GFF5689 at 64.778 kb on + strand, within GFF5689 at 64.779 kb on - strand, within GFF5689 at 64.817 kb on + strand, within GFF5689 at 64.818 kb on - strand, within GFF5689 at 64.833 kb on - strand, within GFF5689 at 64.907 kb on + strand, within GFF5689 at 64.907 kb on + strand, within GFF5689 at 64.907 kb on + strand, within GFF5689 at 64.908 kb on - strand, within GFF5689 at 64.908 kb on - strand, within GFF5689 at 65.018 kb on + strand, within GFF5689 at 65.018 kb on + strand, within GFF5689 at 65.019 kb on - strand, within GFF5689 at 65.019 kb on - strand, within GFF5689 at 65.019 kb on - strand, within GFF5689 at 65.207 kb on + strand, within GFF5689 at 65.207 kb on + strand, within GFF5689 at 65.207 kb on + strand, within GFF5689 at 65.207 kb on + strand, within GFF5689 at 65.208 kb on - strand, within GFF5689 at 65.208 kb on - strand, within GFF5689 at 65.208 kb on - strand, within GFF5689 at 65.208 kb on - strand, within GFF5689 at 65.208 kb on - strand, within GFF5689
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 62,449 + GFF5686 0.22 -0.6 62,710 + GFF5686 0.87 +0.4 62,710 + GFF5686 0.87 -1.2 62,711 - GFF5686 0.88 -1.6 62,711 - GFF5686 0.88 -0.3 62,711 - GFF5686 0.88 -0.0 62,810 + GFF5687 0.10 -1.2 63,032 + GFF5687 0.50 +0.5 63,032 + GFF5687 0.50 -0.6 63,032 + GFF5687 0.50 -0.5 63,032 + GFF5687 0.50 +0.1 63,033 - GFF5687 0.51 -0.6 63,033 - GFF5687 0.51 -0.8 63,359 + -0.1 63,359 + -0.4 63,359 + -0.0 63,360 - -0.3 63,360 - -0.4 63,360 - +1.2 63,360 - -0.4 63,360 - -1.1 63,534 - GFF5688 0.12 -1.9 63,728 + GFF5688 0.33 +0.7 63,728 + GFF5688 0.33 -1.6 63,728 + GFF5688 0.33 -0.5 63,729 - GFF5688 0.33 -0.2 63,729 - GFF5688 0.33 -0.8 63,729 - GFF5688 0.33 -0.4 63,729 - GFF5688 0.33 +0.0 64,376 + +0.0 64,376 + -0.3 64,376 + -0.9 64,376 + +1.2 64,376 + +0.8 64,377 - -0.2 64,377 - +1.0 64,377 - +0.7 64,572 - GFF5689 0.25 -0.4 64,572 - GFF5689 0.25 +0.2 64,572 - GFF5689 0.25 +0.1 64,778 + GFF5689 0.46 -0.1 64,779 - GFF5689 0.46 -0.3 64,817 + GFF5689 0.50 +0.1 64,818 - GFF5689 0.50 -0.4 64,833 - GFF5689 0.51 -0.6 64,907 + GFF5689 0.58 +0.3 64,907 + GFF5689 0.58 +0.2 64,907 + GFF5689 0.58 +0.2 64,908 - GFF5689 0.59 -0.8 64,908 - GFF5689 0.59 +0.1 65,018 + GFF5689 0.70 +0.0 65,018 + GFF5689 0.70 -0.3 65,019 - GFF5689 0.70 +1.6 65,019 - GFF5689 0.70 +0.4 65,019 - GFF5689 0.70 -0.2 65,207 + GFF5689 0.88 +0.0 65,207 + GFF5689 0.88 -2.6 65,207 + GFF5689 0.88 +0.9 65,207 + GFF5689 0.88 +0.8 65,208 - GFF5689 0.89 +0.3 65,208 - GFF5689 0.89 +0.0 65,208 - GFF5689 0.89 +0.0 65,208 - GFF5689 0.89 -1.0 65,208 - GFF5689 0.89 -0.4
Or see this region's nucleotide sequence