Strain Fitness in Variovorax sp. SCN45 around GFF5654

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5653 and GFF5654 are separated by 34 nucleotidesGFF5654 and GFF5655 overlap by 1 nucleotides GFF5653 - Acyl-CoA dehydrogenase (EC 1.3.8.1), Mycobacterial subgroup FadE16, at 28,955 to 30,070 GFF5653 GFF5654 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 30,105 to 31,553 GFF5654 GFF5655 - Formate dehydrogenase formation protein FdhE, at 31,553 to 32,581 GFF5655 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.616 kb on + strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.617 kb on - strand, within GFF5653at 29.826 kb on + strand, within GFF5653at 29.826 kb on + strand, within GFF5653at 29.827 kb on - strand, within GFF5653at 29.827 kb on - strand, within GFF5653at 30.107 kb on - strandat 30.107 kb on - strandat 30.506 kb on - strand, within GFF5654at 30.506 kb on - strand, within GFF5654at 30.506 kb on - strand, within GFF5654at 30.506 kb on - strand, within GFF5654at 30.718 kb on + strand, within GFF5654at 30.718 kb on + strand, within GFF5654at 30.718 kb on + strand, within GFF5654at 30.719 kb on - strand, within GFF5654at 30.719 kb on - strand, within GFF5654at 30.719 kb on - strand, within GFF5654at 30.838 kb on + strand, within GFF5654at 30.838 kb on + strand, within GFF5654at 30.838 kb on + strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.896 kb on - strand, within GFF5654at 30.896 kb on - strand, within GFF5654at 31.641 kb on - strandat 31.688 kb on + strand, within GFF5655at 31.688 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 32.001 kb on + strand, within GFF5655at 32.001 kb on + strand, within GFF5655at 32.001 kb on + strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.052 kb on + strand, within GFF5655at 32.294 kb on + strand, within GFF5655at 32.294 kb on + strand, within GFF5655at 32.294 kb on + strand, within GFF5655at 32.295 kb on - strand, within GFF5655at 32.295 kb on - strand, within GFF5655at 32.347 kb on - strand, within GFF5655at 32.347 kb on - strand, within GFF5655at 32.347 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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29,616 + GFF5653 0.59 +0.2
29,616 + GFF5653 0.59 -0.5
29,616 + GFF5653 0.59 -0.9
29,616 + GFF5653 0.59 -0.4
29,616 + GFF5653 0.59 -0.2
29,616 + GFF5653 0.59 +0.0
29,616 + GFF5653 0.59 +0.2
29,616 + GFF5653 0.59 -0.8
29,616 + GFF5653 0.59 -0.1
29,617 - GFF5653 0.59 -0.3
29,617 - GFF5653 0.59 -2.1
29,617 - GFF5653 0.59 -0.4
29,617 - GFF5653 0.59 -0.7
29,617 - GFF5653 0.59 +0.1
29,617 - GFF5653 0.59 +0.3
29,617 - GFF5653 0.59 -0.4
29,617 - GFF5653 0.59 -0.3
29,617 - GFF5653 0.59 -0.4
29,617 - GFF5653 0.59 -0.2
29,617 - GFF5653 0.59 -0.4
29,617 - GFF5653 0.59 +0.2
29,617 - GFF5653 0.59 +0.0
29,617 - GFF5653 0.59 -0.4
29,617 - GFF5653 0.59 -0.6
29,617 - GFF5653 0.59 -0.5
29,617 - GFF5653 0.59 -0.2
29,826 + GFF5653 0.78 -0.2
29,826 + GFF5653 0.78 +1.3
29,827 - GFF5653 0.78 -0.1
29,827 - GFF5653 0.78 +1.1
30,107 - -1.0
30,107 - +0.0
30,506 - GFF5654 0.28 +0.2
30,506 - GFF5654 0.28 -1.2
30,506 - GFF5654 0.28 +0.1
30,506 - GFF5654 0.28 -1.6
30,718 + GFF5654 0.42 -2.0
30,718 + GFF5654 0.42 -1.1
30,718 + GFF5654 0.42 -1.0
30,719 - GFF5654 0.42 -0.3
30,719 - GFF5654 0.42 +0.0
30,719 - GFF5654 0.42 -1.5
30,838 + GFF5654 0.51 -0.4
30,838 + GFF5654 0.51 +0.1
30,838 + GFF5654 0.51 +0.4
30,839 - GFF5654 0.51 +0.2
30,839 - GFF5654 0.51 -1.1
30,839 - GFF5654 0.51 -0.5
30,839 - GFF5654 0.51 -1.4
30,895 + GFF5654 0.55 +0.4
30,895 + GFF5654 0.55 -0.5
30,895 + GFF5654 0.55 -0.1
30,895 + GFF5654 0.55 +0.1
30,895 + GFF5654 0.55 +0.5
30,896 - GFF5654 0.55 -0.2
30,896 - GFF5654 0.55 +0.4
31,641 - +2.6
31,688 + GFF5655 0.13 -0.2
31,688 + GFF5655 0.13 -0.2
31,869 + GFF5655 0.31 -2.6
31,869 + GFF5655 0.31 -0.4
31,869 + GFF5655 0.31 -0.7
31,869 + GFF5655 0.31 +0.1
31,869 + GFF5655 0.31 +0.2
31,870 - GFF5655 0.31 -0.3
31,870 - GFF5655 0.31 -0.7
31,870 - GFF5655 0.31 +0.2
31,870 - GFF5655 0.31 +0.0
31,870 - GFF5655 0.31 +0.1
31,870 - GFF5655 0.31 +0.2
32,001 + GFF5655 0.44 -2.1
32,001 + GFF5655 0.44 +0.2
32,001 + GFF5655 0.44 +0.2
32,002 - GFF5655 0.44 -1.7
32,002 - GFF5655 0.44 -2.3
32,002 - GFF5655 0.44 -0.3
32,002 - GFF5655 0.44 -0.2
32,002 - GFF5655 0.44 -0.9
32,052 + GFF5655 0.48 -0.4
32,294 + GFF5655 0.72 -0.8
32,294 + GFF5655 0.72 -0.3
32,294 + GFF5655 0.72 -0.5
32,295 - GFF5655 0.72 +0.1
32,295 - GFF5655 0.72 +1.6
32,347 - GFF5655 0.77 -0.6
32,347 - GFF5655 0.77 -0.1
32,347 - GFF5655 0.77 -0.9
32,401 - GFF5655 0.82 +1.3
32,401 - GFF5655 0.82 -0.5
32,401 - GFF5655 0.82 -0.4
32,401 - GFF5655 0.82 +0.1

Or see this region's nucleotide sequence