Strain Fitness in Variovorax sp. SCN45 around GFF5595

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5594 and GFF5595 are separated by 31 nucleotidesGFF5595 and GFF5596 are separated by 3 nucleotides GFF5594 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 214,564 to 215,640 GFF5594 GFF5595 - no description, at 215,672 to 216,709 GFF5595 GFF5596 - Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1), at 216,713 to 217,546 GFF5596 Position (kb) 215 216 217Strain fitness (log2 ratio) -2 -1 0 1at 214.814 kb on - strand, within GFF5594at 214.814 kb on - strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.228 kb on - strand, within GFF5594at 215.228 kb on - strand, within GFF5594at 215.260 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.462 kb on - strand, within GFF5594at 215.462 kb on - strand, within GFF5594at 215.462 kb on - strand, within GFF5594at 215.795 kb on + strand, within GFF5595at 216.071 kb on + strand, within GFF5595at 216.072 kb on - strand, within GFF5595at 216.072 kb on - strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.191 kb on + strand, within GFF5595at 216.191 kb on + strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.371 kb on + strand, within GFF5595at 216.492 kb on - strand, within GFF5595at 216.492 kb on - strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.549 kb on - strand, within GFF5595at 216.549 kb on - strand, within GFF5595at 216.650 kb on + strandat 216.683 kb on + strandat 216.684 kb on - strandat 216.788 kb on + strandat 216.803 kb on + strand, within GFF5596at 216.803 kb on + strand, within GFF5596at 216.804 kb on - strand, within GFF5596at 216.804 kb on - strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.872 kb on + strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.956 kb on + strand, within GFF5596at 216.956 kb on + strand, within GFF5596at 216.957 kb on - strand, within GFF5596at 216.957 kb on - strand, within GFF5596at 217.358 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
214,814 - GFF5594 0.23 +0.2
214,814 - GFF5594 0.23 +0.7
215,227 + GFF5594 0.62 +0.5
215,227 + GFF5594 0.62 -0.5
215,227 + GFF5594 0.62 +0.2
215,227 + GFF5594 0.62 -0.2
215,227 + GFF5594 0.62 -0.3
215,227 + GFF5594 0.62 +0.5
215,228 - GFF5594 0.62 -0.6
215,228 - GFF5594 0.62 +0.8
215,260 + GFF5594 0.65 -0.3
215,461 + GFF5594 0.83 -0.6
215,461 + GFF5594 0.83 -0.1
215,461 + GFF5594 0.83 -0.4
215,461 + GFF5594 0.83 -0.2
215,462 - GFF5594 0.83 +0.1
215,462 - GFF5594 0.83 -0.2
215,462 - GFF5594 0.83 -1.7
215,795 + GFF5595 0.12 -0.2
216,071 + GFF5595 0.38 +0.3
216,072 - GFF5595 0.39 -0.4
216,072 - GFF5595 0.39 -0.3
216,092 + GFF5595 0.40 -0.5
216,092 + GFF5595 0.40 +0.5
216,092 + GFF5595 0.40 -0.1
216,092 + GFF5595 0.40 +0.5
216,092 + GFF5595 0.40 -0.0
216,093 - GFF5595 0.41 -0.0
216,093 - GFF5595 0.41 -0.3
216,093 - GFF5595 0.41 +0.1
216,152 + GFF5595 0.46 -0.6
216,152 + GFF5595 0.46 +0.3
216,152 + GFF5595 0.46 +0.7
216,153 - GFF5595 0.46 +0.5
216,153 - GFF5595 0.46 +0.0
216,153 - GFF5595 0.46 +0.1
216,191 + GFF5595 0.50 +0.2
216,191 + GFF5595 0.50 +0.3
216,192 - GFF5595 0.50 +0.2
216,192 - GFF5595 0.50 -0.6
216,192 - GFF5595 0.50 -0.4
216,371 + GFF5595 0.67 +0.1
216,492 - GFF5595 0.79 +0.3
216,492 - GFF5595 0.79 -1.4
216,548 + GFF5595 0.84 +0.3
216,548 + GFF5595 0.84 +0.2
216,548 + GFF5595 0.84 -0.7
216,549 - GFF5595 0.84 +0.0
216,549 - GFF5595 0.84 -0.3
216,650 + +0.8
216,683 + -0.2
216,684 - -1.0
216,788 + +0.1
216,803 + GFF5596 0.11 -0.7
216,803 + GFF5596 0.11 -2.4
216,804 - GFF5596 0.11 -0.3
216,804 - GFF5596 0.11 +0.3
216,848 + GFF5596 0.16 +0.2
216,848 + GFF5596 0.16 -1.1
216,848 + GFF5596 0.16 +0.8
216,848 + GFF5596 0.16 -0.0
216,848 + GFF5596 0.16 -0.2
216,849 - GFF5596 0.16 -1.1
216,849 - GFF5596 0.16 +0.5
216,849 - GFF5596 0.16 +0.4
216,849 - GFF5596 0.16 +0.5
216,849 - GFF5596 0.16 -0.1
216,849 - GFF5596 0.16 +0.1
216,849 - GFF5596 0.16 +0.1
216,872 + GFF5596 0.19 -0.2
216,873 - GFF5596 0.19 -0.7
216,873 - GFF5596 0.19 +0.9
216,873 - GFF5596 0.19 +0.6
216,885 + GFF5596 0.21 -0.0
216,885 + GFF5596 0.21 +1.0
216,885 + GFF5596 0.21 -0.2
216,886 - GFF5596 0.21 -0.6
216,886 - GFF5596 0.21 +0.4
216,886 - GFF5596 0.21 +0.1
216,886 - GFF5596 0.21 -0.5
216,886 - GFF5596 0.21 +1.1
216,956 + GFF5596 0.29 -0.3
216,956 + GFF5596 0.29 +0.2
216,957 - GFF5596 0.29 -1.0
216,957 - GFF5596 0.29 +0.1
217,358 + GFF5596 0.77 -0.6
217,415 + GFF5596 0.84 -1.3
217,415 + GFF5596 0.84 +0.5
217,415 + GFF5596 0.84 -0.4
217,415 + GFF5596 0.84 -0.1
217,415 + GFF5596 0.84 +0.4
217,415 + GFF5596 0.84 +0.7
217,415 + GFF5596 0.84 -0.2
217,415 + GFF5596 0.84 -1.7
217,416 - GFF5596 0.84 -0.4
217,416 - GFF5596 0.84 +1.3
217,416 - GFF5596 0.84 +0.1
217,416 - GFF5596 0.84 -0.2

Or see this region's nucleotide sequence