Strain Fitness in Variovorax sp. SCN45 around GFF5535

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5534 and GFF5535 are separated by 10 nucleotidesGFF5535 and GFF5536 are separated by 145 nucleotidesGFF5536 and GFF5537 overlap by 4 nucleotides GFF5534 - Queuine tRNA-ribosyltransferase (EC 2.4.2.29), at 162,512 to 163,684 GFF5534 GFF5535 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17), at 163,695 to 164,738 GFF5535 GFF5536 - no description, at 164,884 to 165,558 GFF5536 GFF5537 - Cell division inhibitor SulA, at 165,555 to 167,051 GFF5537 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 162.936 kb on + strand, within GFF5534at 162.937 kb on - strand, within GFF5534at 163.234 kb on - strand, within GFF5534at 163.234 kb on - strand, within GFF5534at 163.572 kb on + strandat 163.572 kb on + strandat 163.572 kb on + strandat 163.572 kb on + strandat 163.572 kb on + strandat 163.572 kb on + strandat 163.573 kb on - strandat 163.573 kb on - strandat 163.573 kb on - strandat 163.573 kb on - strandat 163.573 kb on - strandat 163.573 kb on - strandat 163.573 kb on - strandat 163.732 kb on + strandat 163.732 kb on + strandat 163.732 kb on + strandat 163.732 kb on + strandat 163.732 kb on + strandat 163.733 kb on - strandat 163.733 kb on - strandat 163.733 kb on - strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.771 kb on + strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.772 kb on - strandat 163.793 kb on - strandat 163.793 kb on - strandat 163.842 kb on + strand, within GFF5535at 164.018 kb on + strand, within GFF5535at 164.035 kb on + strand, within GFF5535at 164.036 kb on - strand, within GFF5535at 164.269 kb on + strand, within GFF5535at 164.269 kb on + strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.450 kb on - strand, within GFF5535at 164.852 kb on - strandat 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.038 kb on - strand, within GFF5536at 165.038 kb on - strand, within GFF5536at 165.130 kb on + strand, within GFF5536at 165.131 kb on - strand, within GFF5536at 165.131 kb on - strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.167 kb on - strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.208 kb on + strand, within GFF5536at 165.208 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.361 kb on + strand, within GFF5536at 165.362 kb on - strand, within GFF5536at 165.362 kb on - strand, within GFF5536at 165.495 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.715 kb on - strand, within GFF5537at 165.724 kb on + strand, within GFF5537

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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162,936 + GFF5534 0.36 +2.7
162,937 - GFF5534 0.36 +1.3
163,234 - GFF5534 0.62 -1.6
163,234 - GFF5534 0.62 -1.1
163,572 + -0.6
163,572 + -1.0
163,572 + -0.6
163,572 + +1.1
163,572 + -0.7
163,572 + -0.6
163,573 - -0.7
163,573 - -0.9
163,573 - +0.7
163,573 - -2.2
163,573 - -1.6
163,573 - -0.2
163,573 - -0.9
163,732 + +2.3
163,732 + -0.5
163,732 + +0.7
163,732 + -0.5
163,732 + +0.6
163,733 - -1.1
163,733 - -0.2
163,733 - -0.6
163,771 + -0.5
163,771 + -0.9
163,771 + -0.6
163,771 + +0.6
163,771 + -0.2
163,771 + +1.1
163,771 + -0.7
163,771 + -0.1
163,771 + -0.8
163,771 + -0.2
163,771 + +0.1
163,771 + -0.5
163,771 + +0.0
163,771 + -0.8
163,771 + -1.0
163,771 + -0.5
163,772 - +1.3
163,772 - -0.6
163,772 - -0.6
163,772 - -0.5
163,772 - +0.7
163,772 - -1.0
163,772 - -0.1
163,772 - +0.7
163,772 - +0.2
163,793 - +0.7
163,793 - -0.7
163,842 + GFF5535 0.14 -0.6
164,018 + GFF5535 0.31 -0.3
164,035 + GFF5535 0.33 -1.4
164,036 - GFF5535 0.33 +0.2
164,269 + GFF5535 0.55 +0.4
164,269 + GFF5535 0.55 -1.4
164,270 - GFF5535 0.55 -0.4
164,270 - GFF5535 0.55 -0.5
164,270 - GFF5535 0.55 -0.6
164,270 - GFF5535 0.55 -0.5
164,270 - GFF5535 0.55 -0.4
164,270 - GFF5535 0.55 -0.9
164,270 - GFF5535 0.55 +0.6
164,311 + GFF5535 0.59 -0.3
164,311 + GFF5535 0.59 +0.0
164,311 + GFF5535 0.59 -1.1
164,311 + GFF5535 0.59 -1.3
164,311 + GFF5535 0.59 +0.6
164,311 + GFF5535 0.59 -0.9
164,311 + GFF5535 0.59 -0.1
164,311 + GFF5535 0.59 +0.1
164,311 + GFF5535 0.59 +0.3
164,311 + GFF5535 0.59 -0.3
164,311 + GFF5535 0.59 -0.4
164,312 - GFF5535 0.59 -0.8
164,312 - GFF5535 0.59 -1.6
164,312 - GFF5535 0.59 -0.4
164,312 - GFF5535 0.59 -0.3
164,312 - GFF5535 0.59 -1.0
164,312 - GFF5535 0.59 -0.9
164,312 - GFF5535 0.59 -0.1
164,312 - GFF5535 0.59 -0.1
164,312 - GFF5535 0.59 -0.7
164,312 - GFF5535 0.59 +0.3
164,312 - GFF5535 0.59 -0.1
164,312 - GFF5535 0.59 +0.5
164,312 - GFF5535 0.59 -1.1
164,450 - GFF5535 0.72 -0.5
164,852 - -0.6
165,037 + GFF5536 0.23 -0.7
165,037 + GFF5536 0.23 -0.7
165,037 + GFF5536 0.23 +0.4
165,037 + GFF5536 0.23 -0.4
165,037 + GFF5536 0.23 -0.6
165,037 + GFF5536 0.23 +0.1
165,038 - GFF5536 0.23 -0.6
165,038 - GFF5536 0.23 +0.4
165,130 + GFF5536 0.36 +0.3
165,131 - GFF5536 0.37 -0.5
165,131 - GFF5536 0.37 -0.8
165,166 + GFF5536 0.42 -0.2
165,166 + GFF5536 0.42 -0.3
165,166 + GFF5536 0.42 +1.6
165,166 + GFF5536 0.42 -0.3
165,167 - GFF5536 0.42 -0.6
165,193 + GFF5536 0.46 -0.4
165,193 + GFF5536 0.46 -0.3
165,193 + GFF5536 0.46 -0.4
165,193 + GFF5536 0.46 -0.4
165,193 + GFF5536 0.46 +0.4
165,193 + GFF5536 0.46 +1.2
165,193 + GFF5536 0.46 -0.2
165,193 + GFF5536 0.46 +0.0
165,193 + GFF5536 0.46 -0.7
165,193 + GFF5536 0.46 +0.3
165,193 + GFF5536 0.46 -0.9
165,193 + GFF5536 0.46 -0.2
165,193 + GFF5536 0.46 +0.4
165,194 - GFF5536 0.46 +0.5
165,194 - GFF5536 0.46 +0.2
165,194 - GFF5536 0.46 -0.1
165,208 + GFF5536 0.48 +0.7
165,208 + GFF5536 0.48 +0.7
165,283 + GFF5536 0.59 -0.3
165,283 + GFF5536 0.59 -0.3
165,283 + GFF5536 0.59 +0.1
165,284 - GFF5536 0.59 +1.9
165,284 - GFF5536 0.59 -0.3
165,284 - GFF5536 0.59 -0.6
165,284 - GFF5536 0.59 +0.4
165,284 - GFF5536 0.59 -0.6
165,361 + GFF5536 0.71 +0.0
165,362 - GFF5536 0.71 +0.5
165,362 - GFF5536 0.71 -0.3
165,495 + +0.0
165,630 + -0.4
165,630 + -0.1
165,630 + +0.3
165,630 + -0.2
165,630 + -0.5
165,631 - +0.2
165,631 - -0.3
165,631 - -0.6
165,631 - +0.6
165,631 - -0.6
165,631 - +0.1
165,631 - -0.1
165,714 + GFF5537 0.11 -0.2
165,714 + GFF5537 0.11 +1.4
165,714 + GFF5537 0.11 +0.5
165,714 + GFF5537 0.11 -1.9
165,714 + GFF5537 0.11 -0.2
165,714 + GFF5537 0.11 -0.1
165,714 + GFF5537 0.11 -0.2
165,715 - GFF5537 0.11 +0.3
165,724 + GFF5537 0.11 -1.0

Or see this region's nucleotide sequence