Strain Fitness in Variovorax sp. SCN45 around GFF5265

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5264 and GFF5265 are separated by 620 nucleotidesGFF5265 and GFF5266 are separated by 247 nucleotides GFF5264 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 131,261 to 132,310 GFF5264 GFF5265 - Outer membrane lipoprotein, at 132,931 to 133,599 GFF5265 GFF5266 - Transaldolase (EC 2.2.1.2), at 133,847 to 134,803 GFF5266 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.936 kb on + strand, within GFF5264at 131.937 kb on - strand, within GFF5264at 131.937 kb on - strand, within GFF5264at 131.937 kb on - strand, within GFF5264at 132.161 kb on + strand, within GFF5264at 132.162 kb on - strand, within GFF5264at 132.176 kb on + strand, within GFF5264at 132.177 kb on - strand, within GFF5264at 132.182 kb on + strand, within GFF5264at 132.182 kb on + strand, within GFF5264at 132.183 kb on - strand, within GFF5264at 132.183 kb on - strand, within GFF5264at 132.183 kb on - strand, within GFF5264at 132.183 kb on - strand, within GFF5264at 132.381 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.656 kb on + strandat 132.657 kb on - strandat 132.657 kb on - strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.659 kb on + strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.660 kb on - strandat 132.782 kb on + strandat 132.782 kb on + strandat 132.782 kb on + strandat 132.782 kb on + strandat 132.782 kb on + strandat 132.782 kb on + strandat 132.782 kb on + strandat 132.783 kb on - strandat 132.783 kb on - strandat 132.783 kb on - strandat 132.932 kb on + strandat 132.946 kb on + strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.984 kb on - strandat 133.082 kb on + strand, within GFF5265at 133.082 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.292 kb on + strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.370 kb on + strand, within GFF5265at 133.370 kb on + strand, within GFF5265at 133.371 kb on - strand, within GFF5265at 133.622 kb on + strandat 133.629 kb on + strandat 133.695 kb on + strandat 133.695 kb on + strandat 133.696 kb on - strandat 133.722 kb on + strandat 133.722 kb on + strandat 133.722 kb on + strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.770 kb on + strandat 133.770 kb on + strandat 133.771 kb on - strandat 133.771 kb on - strandat 133.837 kb on + strandat 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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131,936 + GFF5264 0.64 -0.3
131,936 + GFF5264 0.64 +0.1
131,936 + GFF5264 0.64 -0.0
131,936 + GFF5264 0.64 +0.7
131,936 + GFF5264 0.64 -0.1
131,936 + GFF5264 0.64 +1.2
131,936 + GFF5264 0.64 +0.6
131,936 + GFF5264 0.64 -1.4
131,937 - GFF5264 0.64 -1.5
131,937 - GFF5264 0.64 -0.6
131,937 - GFF5264 0.64 +0.4
132,161 + GFF5264 0.86 +0.1
132,162 - GFF5264 0.86 +0.2
132,176 + GFF5264 0.87 -0.2
132,177 - GFF5264 0.87 +0.2
132,182 + GFF5264 0.88 +0.6
132,182 + GFF5264 0.88 -1.3
132,183 - GFF5264 0.88 +0.5
132,183 - GFF5264 0.88 -0.0
132,183 - GFF5264 0.88 -0.6
132,183 - GFF5264 0.88 -0.1
132,381 + +0.2
132,656 + -0.4
132,656 + -0.7
132,656 + +0.3
132,656 + -1.4
132,656 + +0.4
132,656 + -0.2
132,656 + -0.6
132,657 - +0.0
132,657 - -0.5
132,659 + -1.0
132,659 + -0.4
132,659 + +0.4
132,659 + +0.0
132,659 + -0.2
132,659 + +1.0
132,659 + +0.8
132,659 + -0.3
132,660 - +1.0
132,660 - -0.3
132,660 - -0.2
132,660 - -1.3
132,660 - +0.3
132,660 - -0.6
132,660 - -1.4
132,660 - +0.3
132,782 + -0.9
132,782 + +0.2
132,782 + +0.0
132,782 + -0.4
132,782 + +1.0
132,782 + +0.6
132,782 + -0.8
132,783 - +0.6
132,783 - -0.7
132,783 - -0.1
132,932 + -0.2
132,946 + +0.4
132,947 - +0.0
132,947 - -1.6
132,947 - -0.4
132,947 - -0.8
132,947 - -0.4
132,947 - -0.6
132,947 - +0.7
132,984 - +0.3
133,082 + GFF5265 0.23 -0.7
133,082 + GFF5265 0.23 -0.1
133,109 + GFF5265 0.27 +0.4
133,109 + GFF5265 0.27 +1.6
133,109 + GFF5265 0.27 -0.3
133,292 + GFF5265 0.54 -1.3
133,293 - GFF5265 0.54 +1.9
133,293 - GFF5265 0.54 -0.0
133,293 - GFF5265 0.54 +0.6
133,370 + GFF5265 0.66 +1.1
133,370 + GFF5265 0.66 -1.2
133,371 - GFF5265 0.66 +0.6
133,622 + -1.0
133,629 + +0.9
133,695 + -0.2
133,695 + +0.3
133,696 - -0.8
133,722 + -0.2
133,722 + -0.2
133,722 + +0.1
133,723 - -0.4
133,723 - +0.1
133,723 - -0.5
133,723 - -0.5
133,723 - +0.1
133,770 + -0.4
133,770 + +1.3
133,771 - -0.5
133,771 - -0.0
133,837 + -1.1
134,180 + GFF5266 0.35 -0.6
134,180 + GFF5266 0.35 +0.0
134,180 + GFF5266 0.35 -0.5
134,180 + GFF5266 0.35 -0.8
134,180 + GFF5266 0.35 -0.2
134,181 - GFF5266 0.35 -0.4
134,181 - GFF5266 0.35 +0.3
134,181 - GFF5266 0.35 -0.3
134,375 + GFF5266 0.55 +0.2
134,375 + GFF5266 0.55 -0.2
134,376 - GFF5266 0.55 -0.4
134,376 - GFF5266 0.55 +0.6
134,376 - GFF5266 0.55 +1.3
134,385 - GFF5266 0.56 -0.1
134,385 - GFF5266 0.56 +0.4
134,385 - GFF5266 0.56 -0.9
134,385 - GFF5266 0.56 +0.4
134,385 - GFF5266 0.56 +0.4
134,385 - GFF5266 0.56 -0.6
134,468 + GFF5266 0.65 -0.6
134,468 + GFF5266 0.65 -0.0
134,468 + GFF5266 0.65 +0.2
134,468 + GFF5266 0.65 -0.4
134,468 + GFF5266 0.65 -0.5
134,468 + GFF5266 0.65 -0.3
134,468 + GFF5266 0.65 -0.0
134,469 - GFF5266 0.65 -0.0
134,469 - GFF5266 0.65 -0.1
134,469 - GFF5266 0.65 +0.6
134,469 - GFF5266 0.65 +1.0
134,474 + GFF5266 0.66 -0.1
134,474 + GFF5266 0.66 -0.2
134,475 - GFF5266 0.66 -0.0
134,475 - GFF5266 0.66 -0.3
134,475 - GFF5266 0.66 -1.9
134,475 - GFF5266 0.66 -0.2
134,477 + GFF5266 0.66 +0.1
134,477 + GFF5266 0.66 -0.5
134,477 + GFF5266 0.66 +0.0
134,477 + GFF5266 0.66 +0.9
134,477 + GFF5266 0.66 +0.3
134,477 + GFF5266 0.66 -0.6
134,477 + GFF5266 0.66 +0.1
134,477 + GFF5266 0.66 -0.4
134,478 - GFF5266 0.66 +0.4
134,478 - GFF5266 0.66 -1.4
134,478 - GFF5266 0.66 -1.3
134,478 - GFF5266 0.66 +1.0

Or see this region's nucleotide sequence