Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5223 and GFF5224 are separated by 122 nucleotides GFF5224 and GFF5225 are separated by 106 nucleotides GFF5225 and GFF5226 overlap by 4 nucleotides
GFF5223 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 86,235 to 87,134
GFF5223
GFF5224 - Uncharacterized MFS-type transporter, at 87,257 to 88,528
GFF5224
GFF5225 - hypothetical protein, at 88,635 to 88,823
GFF5225
GFF5226 - Probable cytochrome c2, at 88,820 to 89,536
GFF5226
Position (kb) 87
88
89 Strain fitness (log2 ratio) -1
0
1
2 at 86.414 kb on - strand, within GFF5223 at 86.734 kb on + strand, within GFF5223 at 86.735 kb on - strand, within GFF5223 at 86.735 kb on - strand, within GFF5223 at 86.735 kb on - strand, within GFF5223 at 86.941 kb on + strand, within GFF5223 at 86.942 kb on - strand, within GFF5223 at 86.942 kb on - strand, within GFF5223 at 87.219 kb on - strand at 87.219 kb on - strand at 87.362 kb on + strand at 87.362 kb on + strand at 87.362 kb on + strand at 87.363 kb on - strand at 87.363 kb on - strand at 87.434 kb on + strand, within GFF5224 at 87.434 kb on + strand, within GFF5224 at 87.434 kb on + strand, within GFF5224 at 87.435 kb on - strand, within GFF5224 at 87.435 kb on - strand, within GFF5224 at 87.435 kb on - strand, within GFF5224 at 87.716 kb on + strand, within GFF5224 at 87.716 kb on + strand, within GFF5224 at 87.717 kb on - strand, within GFF5224 at 87.785 kb on + strand, within GFF5224 at 87.785 kb on + strand, within GFF5224 at 87.785 kb on + strand, within GFF5224 at 87.785 kb on + strand, within GFF5224 at 87.786 kb on - strand, within GFF5224 at 87.786 kb on - strand, within GFF5224 at 87.786 kb on - strand, within GFF5224 at 87.786 kb on - strand, within GFF5224 at 87.786 kb on - strand, within GFF5224 at 87.786 kb on - strand, within GFF5224 at 88.022 kb on + strand, within GFF5224 at 88.022 kb on + strand, within GFF5224 at 88.022 kb on + strand, within GFF5224 at 88.220 kb on + strand, within GFF5224 at 88.221 kb on - strand, within GFF5224 at 88.271 kb on + strand, within GFF5224 at 88.386 kb on + strand, within GFF5224 at 88.406 kb on + strand at 88.406 kb on + strand at 88.566 kb on - strand at 88.566 kb on - strand at 88.566 kb on - strand at 89.021 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.081 kb on + strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.082 kb on - strand, within GFF5226 at 89.130 kb on - strand, within GFF5226 at 89.153 kb on + strand, within GFF5226 at 89.153 kb on + strand, within GFF5226 at 89.327 kb on + strand, within GFF5226 at 89.328 kb on - strand, within GFF5226 at 89.328 kb on - strand, within GFF5226
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 86,414 - GFF5223 0.20 -0.0 86,734 + GFF5223 0.55 -0.2 86,735 - GFF5223 0.56 +0.1 86,735 - GFF5223 0.56 +0.6 86,735 - GFF5223 0.56 +0.3 86,941 + GFF5223 0.78 +1.8 86,942 - GFF5223 0.79 -0.1 86,942 - GFF5223 0.79 -0.7 87,219 - +0.6 87,219 - -0.6 87,362 + +0.7 87,362 + -0.3 87,362 + -1.0 87,363 - -0.5 87,363 - +0.3 87,434 + GFF5224 0.14 +0.2 87,434 + GFF5224 0.14 -0.3 87,434 + GFF5224 0.14 -0.0 87,435 - GFF5224 0.14 -0.4 87,435 - GFF5224 0.14 +1.6 87,435 - GFF5224 0.14 -0.0 87,716 + GFF5224 0.36 -1.0 87,716 + GFF5224 0.36 +0.3 87,717 - GFF5224 0.36 -1.0 87,785 + GFF5224 0.42 -0.9 87,785 + GFF5224 0.42 -0.3 87,785 + GFF5224 0.42 +0.6 87,785 + GFF5224 0.42 +0.2 87,786 - GFF5224 0.42 +0.8 87,786 - GFF5224 0.42 +0.6 87,786 - GFF5224 0.42 +0.0 87,786 - GFF5224 0.42 +2.6 87,786 - GFF5224 0.42 +0.4 87,786 - GFF5224 0.42 -0.8 88,022 + GFF5224 0.60 +0.6 88,022 + GFF5224 0.60 -0.0 88,022 + GFF5224 0.60 +0.3 88,220 + GFF5224 0.76 +0.3 88,221 - GFF5224 0.76 -0.4 88,271 + GFF5224 0.80 -0.5 88,386 + GFF5224 0.89 +1.1 88,406 + +0.7 88,406 + -0.7 88,566 - -0.4 88,566 - +0.6 88,566 - +2.0 89,021 + GFF5226 0.28 +1.0 89,081 + GFF5226 0.36 +0.1 89,081 + GFF5226 0.36 -0.1 89,081 + GFF5226 0.36 -0.3 89,082 - GFF5226 0.37 -0.3 89,082 - GFF5226 0.37 -0.0 89,082 - GFF5226 0.37 +1.1 89,082 - GFF5226 0.37 +0.7 89,082 - GFF5226 0.37 -0.3 89,130 - GFF5226 0.43 +1.6 89,153 + GFF5226 0.46 +0.3 89,153 + GFF5226 0.46 -0.3 89,327 + GFF5226 0.71 +0.5 89,328 - GFF5226 0.71 -0.6 89,328 - GFF5226 0.71 -0.5
Or see this region's nucleotide sequence