Strain Fitness in Variovorax sp. SCN45 around GFF5114

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5112 and GFF5113 are separated by 15 nucleotidesGFF5113 and GFF5114 are separated by 89 nucleotidesGFF5114 and GFF5115 are separated by 17 nucleotides GFF5112 - Glutathione peroxidase (EC 1.11.1.9) @ Thioredoxin peroxidase (EC 1.11.1.15), at 213,828 to 214,316 GFF5112 GFF5113 - hypothetical protein, at 214,332 to 214,775 GFF5113 GFF5114 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 214,865 to 216,097 GFF5114 GFF5115 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 216,115 to 217,233 GFF5115 Position (kb) 214 215 216 217Strain fitness (log2 ratio) -2 -1 0 1at 213.981 kb on + strand, within GFF5112at 213.981 kb on + strand, within GFF5112at 213.981 kb on + strand, within GFF5112at 213.999 kb on - strand, within GFF5112at 213.999 kb on - strand, within GFF5112at 214.083 kb on + strand, within GFF5112at 214.083 kb on + strand, within GFF5112at 214.084 kb on - strand, within GFF5112at 214.084 kb on - strand, within GFF5112at 214.084 kb on - strand, within GFF5112at 214.084 kb on - strand, within GFF5112at 214.146 kb on + strand, within GFF5112at 214.251 kb on + strand, within GFF5112at 214.252 kb on - strand, within GFF5112at 214.333 kb on + strandat 214.333 kb on + strandat 214.333 kb on + strandat 214.333 kb on + strandat 214.333 kb on + strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.334 kb on - strandat 214.424 kb on - strand, within GFF5113at 214.424 kb on - strand, within GFF5113at 214.424 kb on - strand, within GFF5113at 214.534 kb on + strand, within GFF5113at 214.534 kb on + strand, within GFF5113at 214.534 kb on + strand, within GFF5113at 214.534 kb on + strand, within GFF5113at 214.534 kb on + strand, within GFF5113at 214.535 kb on - strand, within GFF5113at 214.535 kb on - strand, within GFF5113at 214.633 kb on + strand, within GFF5113at 214.634 kb on - strand, within GFF5113at 214.722 kb on + strand, within GFF5113at 214.722 kb on + strand, within GFF5113at 214.723 kb on - strand, within GFF5113at 214.723 kb on - strand, within GFF5113at 215.025 kb on + strand, within GFF5114at 215.052 kb on + strand, within GFF5114at 215.052 kb on + strand, within GFF5114at 215.052 kb on + strand, within GFF5114at 215.052 kb on + strand, within GFF5114at 215.053 kb on - strand, within GFF5114at 215.053 kb on - strand, within GFF5114at 215.053 kb on - strand, within GFF5114at 215.053 kb on - strand, within GFF5114at 215.298 kb on + strand, within GFF5114at 215.299 kb on - strand, within GFF5114at 215.299 kb on - strand, within GFF5114at 215.299 kb on - strand, within GFF5114at 215.299 kb on - strand, within GFF5114at 215.383 kb on - strand, within GFF5114at 215.397 kb on + strand, within GFF5114at 215.397 kb on + strand, within GFF5114at 215.397 kb on + strand, within GFF5114at 215.398 kb on - strand, within GFF5114at 215.826 kb on + strand, within GFF5114at 215.899 kb on + strand, within GFF5114at 215.900 kb on - strand, within GFF5114at 215.900 kb on - strand, within GFF5114at 215.900 kb on - strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.940 kb on + strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.941 kb on - strand, within GFF5114at 215.985 kb on + strandat 215.985 kb on + strandat 215.985 kb on + strandat 215.985 kb on + strandat 215.986 kb on - strandat 215.986 kb on - strandat 215.986 kb on - strandat 215.986 kb on - strandat 215.986 kb on - strandat 216.116 kb on + strandat 216.117 kb on - strandat 216.117 kb on - strandat 216.332 kb on + strand, within GFF5115at 216.332 kb on + strand, within GFF5115at 216.332 kb on + strand, within GFF5115at 216.332 kb on + strand, within GFF5115at 216.333 kb on - strand, within GFF5115at 216.575 kb on + strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.869 kb on + strand, within GFF5115at 216.869 kb on + strand, within GFF5115at 216.870 kb on - strand, within GFF5115at 216.870 kb on - strand, within GFF5115at 216.870 kb on - strand, within GFF5115at 217.064 kb on + strand, within GFF5115at 217.064 kb on + strand, within GFF5115at 217.065 kb on - strand, within GFF5115at 217.065 kb on - strand, within GFF5115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
213,981 + GFF5112 0.31 -0.0
213,981 + GFF5112 0.31 -0.4
213,981 + GFF5112 0.31 +0.2
213,999 - GFF5112 0.35 -1.0
213,999 - GFF5112 0.35 -0.6
214,083 + GFF5112 0.52 -0.6
214,083 + GFF5112 0.52 -1.0
214,084 - GFF5112 0.52 -0.4
214,084 - GFF5112 0.52 +0.8
214,084 - GFF5112 0.52 -0.0
214,084 - GFF5112 0.52 +0.0
214,146 + GFF5112 0.65 -1.5
214,251 + GFF5112 0.87 +0.1
214,252 - GFF5112 0.87 -0.8
214,333 + +0.5
214,333 + +0.6
214,333 + +0.0
214,333 + +0.8
214,333 + -0.2
214,334 - -0.1
214,334 - -0.8
214,334 - -0.5
214,334 - +0.2
214,334 - -0.2
214,334 - +1.1
214,334 - +1.7
214,334 - +1.3
214,424 - GFF5113 0.21 +0.4
214,424 - GFF5113 0.21 +0.1
214,424 - GFF5113 0.21 +0.3
214,534 + GFF5113 0.45 -0.5
214,534 + GFF5113 0.45 -0.1
214,534 + GFF5113 0.45 +0.7
214,534 + GFF5113 0.45 -1.3
214,534 + GFF5113 0.45 -0.0
214,535 - GFF5113 0.46 +0.7
214,535 - GFF5113 0.46 +1.4
214,633 + GFF5113 0.68 -1.6
214,634 - GFF5113 0.68 +0.3
214,722 + GFF5113 0.88 +0.5
214,722 + GFF5113 0.88 +1.4
214,723 - GFF5113 0.88 +0.2
214,723 - GFF5113 0.88 +0.1
215,025 + GFF5114 0.13 +1.0
215,052 + GFF5114 0.15 -0.6
215,052 + GFF5114 0.15 -0.8
215,052 + GFF5114 0.15 +1.7
215,052 + GFF5114 0.15 +0.1
215,053 - GFF5114 0.15 +0.2
215,053 - GFF5114 0.15 +1.1
215,053 - GFF5114 0.15 -1.3
215,053 - GFF5114 0.15 -0.8
215,298 + GFF5114 0.35 -0.4
215,299 - GFF5114 0.35 +0.3
215,299 - GFF5114 0.35 +0.1
215,299 - GFF5114 0.35 +0.7
215,299 - GFF5114 0.35 -1.5
215,383 - GFF5114 0.42 +0.4
215,397 + GFF5114 0.43 -0.3
215,397 + GFF5114 0.43 +0.3
215,397 + GFF5114 0.43 -0.5
215,398 - GFF5114 0.43 -0.7
215,826 + GFF5114 0.78 -0.1
215,899 + GFF5114 0.84 -0.3
215,900 - GFF5114 0.84 -0.0
215,900 - GFF5114 0.84 -0.4
215,900 - GFF5114 0.84 +0.4
215,940 + GFF5114 0.87 -0.3
215,940 + GFF5114 0.87 -0.7
215,940 + GFF5114 0.87 +0.3
215,940 + GFF5114 0.87 -0.2
215,940 + GFF5114 0.87 -0.1
215,940 + GFF5114 0.87 -1.4
215,940 + GFF5114 0.87 -1.8
215,941 - GFF5114 0.87 -0.6
215,941 - GFF5114 0.87 -0.4
215,941 - GFF5114 0.87 +1.7
215,941 - GFF5114 0.87 +0.2
215,941 - GFF5114 0.87 -0.4
215,941 - GFF5114 0.87 -0.5
215,941 - GFF5114 0.87 -0.4
215,985 + +0.1
215,985 + -0.7
215,985 + -0.1
215,985 + -0.2
215,986 - +0.4
215,986 - +0.7
215,986 - -0.1
215,986 - -0.2
215,986 - +1.7
216,116 + -0.1
216,117 - -0.3
216,117 - -0.3
216,332 + GFF5115 0.19 -0.1
216,332 + GFF5115 0.19 -0.1
216,332 + GFF5115 0.19 -1.5
216,332 + GFF5115 0.19 +1.7
216,333 - GFF5115 0.19 +0.0
216,575 + GFF5115 0.41 -0.4
216,576 - GFF5115 0.41 +0.5
216,576 - GFF5115 0.41 -0.5
216,576 - GFF5115 0.41 +0.7
216,576 - GFF5115 0.41 -0.3
216,597 - GFF5115 0.43 -0.5
216,597 - GFF5115 0.43 -0.3
216,597 - GFF5115 0.43 -0.3
216,597 - GFF5115 0.43 -0.2
216,869 + GFF5115 0.67 -0.1
216,869 + GFF5115 0.67 -0.9
216,870 - GFF5115 0.67 +1.7
216,870 - GFF5115 0.67 +0.7
216,870 - GFF5115 0.67 +0.3
217,064 + GFF5115 0.85 -0.6
217,064 + GFF5115 0.85 -1.0
217,065 - GFF5115 0.85 -1.3
217,065 - GFF5115 0.85 -0.7

Or see this region's nucleotide sequence