Strain Fitness in Variovorax sp. SCN45 around GFF5046

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5044 and GFF5045 are separated by 16 nucleotidesGFF5045 and GFF5046 are separated by 18 nucleotidesGFF5046 and GFF5047 are separated by 28 nucleotidesGFF5047 and GFF5048 are separated by 22 nucleotides GFF5044 - ABC transporter, ATP-binding protein (cluster 9, phospholipid), at 146,103 to 146,948 GFF5044 GFF5045 - ABC transporter, substrate-binding protein (cluster 9, phospholipid), at 146,965 to 147,924 GFF5045 GFF5046 - putative lipoprotein, at 147,943 to 148,656 GFF5046 GFF5047 - hypothetical protein, at 148,685 to 148,906 GFF5047 GFF5048 - no description, at 148,929 to 149,945 GFF5048 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.954 kb on - strandat 146.954 kb on - strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.969 kb on - strandat 147.076 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.737 kb on - strand, within GFF5045at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.023 kb on - strand, within GFF5046at 148.087 kb on + strand, within GFF5046at 148.088 kb on - strand, within GFF5046at 148.423 kb on + strand, within GFF5046at 148.423 kb on + strand, within GFF5046at 148.424 kb on - strand, within GFF5046at 148.424 kb on - strand, within GFF5046at 148.424 kb on - strand, within GFF5046at 148.654 kb on + strandat 148.654 kb on + strandat 148.655 kb on - strandat 148.655 kb on - strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 149.021 kb on + strandat 149.021 kb on + strandat 149.021 kb on + strandat 149.021 kb on + strandat 149.022 kb on - strandat 149.022 kb on - strandat 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.057 kb on - strand, within GFF5048at 149.112 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.394 kb on - strand, within GFF5048at 149.394 kb on - strand, within GFF5048at 149.454 kb on + strand, within GFF5048at 149.455 kb on - strand, within GFF5048at 149.455 kb on - strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.535 kb on - strand, within GFF5048at 149.535 kb on - strand, within GFF5048at 149.535 kb on - strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.656 kb on - strand, within GFF5048

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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146,953 + -0.4
146,953 + +0.1
146,953 + +1.4
146,953 + +0.1
146,953 + -0.5
146,953 + +0.8
146,954 - -1.1
146,954 - -0.2
146,957 + +0.5
146,957 + -0.4
146,957 + -0.3
146,957 + -0.4
146,957 + +0.9
146,958 - -0.8
146,958 - +2.3
146,958 - +0.9
146,958 - -0.8
146,958 - -0.2
146,958 - +0.3
146,958 - -0.4
146,958 - +0.4
146,958 - -1.0
146,969 - +0.2
147,076 + GFF5045 0.12 -0.5
147,262 + GFF5045 0.31 +0.1
147,262 + GFF5045 0.31 -0.2
147,262 + GFF5045 0.31 -0.3
147,262 + GFF5045 0.31 +0.2
147,263 - GFF5045 0.31 -0.4
147,263 - GFF5045 0.31 +1.2
147,263 - GFF5045 0.31 +0.7
147,263 - GFF5045 0.31 +0.9
147,737 - GFF5045 0.80 +0.1
148,022 + GFF5046 0.11 +0.0
148,022 + GFF5046 0.11 +0.4
148,022 + GFF5046 0.11 +1.7
148,022 + GFF5046 0.11 -0.2
148,022 + GFF5046 0.11 -0.5
148,022 + GFF5046 0.11 -0.2
148,023 - GFF5046 0.11 -0.9
148,087 + GFF5046 0.20 -0.1
148,088 - GFF5046 0.20 +0.2
148,423 + GFF5046 0.67 -0.5
148,423 + GFF5046 0.67 +0.2
148,424 - GFF5046 0.67 +0.3
148,424 - GFF5046 0.67 -0.2
148,424 - GFF5046 0.67 -0.2
148,654 + -0.3
148,654 + -0.1
148,655 - -0.4
148,655 - -0.3
148,679 + +0.7
148,679 + +0.4
148,679 + +0.1
148,679 + +0.9
148,679 + -0.9
148,679 + -0.4
148,679 + -1.5
148,679 + +0.1
148,679 + -0.3
148,679 + -1.9
148,679 + -0.3
148,679 + -2.1
148,679 + +1.7
148,679 + -0.1
148,680 - -0.9
148,680 - -0.5
148,680 - +0.5
148,680 - +0.7
148,680 - +0.4
148,680 - +0.2
148,680 - +0.3
148,680 - -0.3
148,680 - -0.0
148,680 - -0.1
148,680 - -1.3
148,680 - -0.1
148,680 - -0.5
148,680 - -0.3
148,680 - -0.8
148,680 - -0.1
148,863 + GFF5047 0.80 -0.5
148,863 + GFF5047 0.80 +0.2
148,863 + GFF5047 0.80 -0.5
148,863 + GFF5047 0.80 +0.3
148,863 + GFF5047 0.80 -0.2
148,863 + GFF5047 0.80 -0.1
148,863 + GFF5047 0.80 -0.4
148,864 - GFF5047 0.81 +0.9
148,864 - GFF5047 0.81 +0.1
148,864 - GFF5047 0.81 +2.1
148,864 - GFF5047 0.81 +0.2
149,021 + +0.1
149,021 + +0.1
149,021 + -0.8
149,021 + -0.2
149,022 - +0.6
149,022 - -0.4
149,041 + GFF5048 0.11 -0.2
149,041 + GFF5048 0.11 -0.0
149,041 + GFF5048 0.11 -0.5
149,041 + GFF5048 0.11 +0.4
149,041 + GFF5048 0.11 +0.5
149,041 + GFF5048 0.11 +0.1
149,041 + GFF5048 0.11 +0.2
149,041 + GFF5048 0.11 +0.3
149,042 - GFF5048 0.11 -0.2
149,042 - GFF5048 0.11 -0.3
149,042 - GFF5048 0.11 +0.4
149,042 - GFF5048 0.11 -0.4
149,042 - GFF5048 0.11 +1.1
149,042 - GFF5048 0.11 -0.4
149,057 - GFF5048 0.13 +0.4
149,112 + GFF5048 0.18 +0.4
149,152 + GFF5048 0.22 +0.3
149,152 + GFF5048 0.22 -0.3
149,152 + GFF5048 0.22 -0.3
149,152 + GFF5048 0.22 -0.4
149,152 + GFF5048 0.22 +0.2
149,152 + GFF5048 0.22 -0.1
149,152 + GFF5048 0.22 +0.3
149,152 + GFF5048 0.22 +0.3
149,152 + GFF5048 0.22 +0.1
149,153 - GFF5048 0.22 -0.1
149,153 - GFF5048 0.22 -1.0
149,153 - GFF5048 0.22 -0.6
149,153 - GFF5048 0.22 -0.6
149,153 - GFF5048 0.22 +0.2
149,153 - GFF5048 0.22 +0.5
149,153 - GFF5048 0.22 -1.6
149,153 - GFF5048 0.22 -2.6
149,153 - GFF5048 0.22 -0.7
149,153 - GFF5048 0.22 +0.5
149,153 - GFF5048 0.22 -0.9
149,153 - GFF5048 0.22 -0.0
149,153 - GFF5048 0.22 +0.9
149,153 - GFF5048 0.22 -0.5
149,156 + GFF5048 0.22 +0.8
149,156 + GFF5048 0.22 +0.7
149,156 + GFF5048 0.22 +2.1
149,156 + GFF5048 0.22 -2.6
149,156 + GFF5048 0.22 +2.7
149,156 + GFF5048 0.22 -0.4
149,156 + GFF5048 0.22 +0.2
149,156 + GFF5048 0.22 +1.1
149,156 + GFF5048 0.22 -0.1
149,156 + GFF5048 0.22 -0.2
149,156 + GFF5048 0.22 -0.1
149,157 - GFF5048 0.22 -0.3
149,157 - GFF5048 0.22 +1.1
149,157 - GFF5048 0.22 -2.0
149,157 - GFF5048 0.22 +0.9
149,157 - GFF5048 0.22 -0.5
149,157 - GFF5048 0.22 +0.2
149,157 - GFF5048 0.22 -1.1
149,157 - GFF5048 0.22 -0.6
149,157 - GFF5048 0.22 -0.4
149,157 - GFF5048 0.22 -0.6
149,157 - GFF5048 0.22 -0.3
149,393 + GFF5048 0.46 -0.2
149,393 + GFF5048 0.46 +0.2
149,393 + GFF5048 0.46 -0.5
149,393 + GFF5048 0.46 +1.1
149,393 + GFF5048 0.46 +0.8
149,394 - GFF5048 0.46 +0.1
149,394 - GFF5048 0.46 +0.2
149,454 + GFF5048 0.52 +0.5
149,455 - GFF5048 0.52 +0.3
149,455 - GFF5048 0.52 +0.7
149,534 + GFF5048 0.59 -0.5
149,534 + GFF5048 0.59 -0.3
149,534 + GFF5048 0.59 -1.2
149,534 + GFF5048 0.59 -0.9
149,534 + GFF5048 0.59 -1.1
149,535 - GFF5048 0.60 +0.2
149,535 - GFF5048 0.60 +0.1
149,535 - GFF5048 0.60 -0.5
149,655 + GFF5048 0.71 +1.1
149,655 + GFF5048 0.71 +0.1
149,655 + GFF5048 0.71 +0.2
149,655 + GFF5048 0.71 -0.1
149,655 + GFF5048 0.71 -0.6
149,655 + GFF5048 0.71 +0.1
149,656 - GFF5048 0.71 -0.4
149,656 - GFF5048 0.71 -2.1
149,656 - GFF5048 0.71 +0.5
149,656 - GFF5048 0.71 +0.5

Or see this region's nucleotide sequence