Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4959 and GFF4960 overlap by 4 nucleotides GFF4960 and GFF4961 overlap by 4 nucleotides GFF4961 and GFF4962 are separated by 7 nucleotides
GFF4959 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 59,803 to 60,792
GFF4959
GFF4960 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 60,789 to 61,544
GFF4960
GFF4961 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 61,541 to 62,260
GFF4961
GFF4962 - Multidrug resistance transporter, Bcr/CflA family, at 62,268 to 63,476
GFF4962
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1
2 at 62.132 kb on + strand, within GFF4961 at 62.132 kb on + strand, within GFF4961 at 62.132 kb on + strand, within GFF4961 at 62.132 kb on + strand, within GFF4961 at 62.133 kb on - strand, within GFF4961 at 62.133 kb on - strand, within GFF4961 at 62.258 kb on + strand at 62.259 kb on - strand at 62.259 kb on - strand at 62.259 kb on - strand at 62.524 kb on + strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.726 kb on - strand, within GFF4962 at 62.726 kb on - strand, within GFF4962 at 62.782 kb on + strand, within GFF4962 at 62.783 kb on - strand, within GFF4962 at 62.860 kb on + strand, within GFF4962 at 63.047 kb on + strand, within GFF4962 at 63.047 kb on + strand, within GFF4962 at 63.048 kb on - strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.098 kb on - strand, within GFF4962
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 62,132 + GFF4961 0.82 -1.3 62,132 + GFF4961 0.82 -0.9 62,132 + GFF4961 0.82 -0.7 62,132 + GFF4961 0.82 -0.3 62,133 - GFF4961 0.82 -0.6 62,133 - GFF4961 0.82 -0.7 62,258 + +0.0 62,259 - -0.0 62,259 - -0.8 62,259 - +0.2 62,524 + GFF4962 0.21 +0.5 62,599 - GFF4962 0.27 -0.5 62,599 - GFF4962 0.27 -0.1 62,599 - GFF4962 0.27 +0.9 62,726 - GFF4962 0.38 +0.1 62,726 - GFF4962 0.38 -0.1 62,782 + GFF4962 0.43 +0.6 62,783 - GFF4962 0.43 -0.5 62,860 + GFF4962 0.49 +1.1 63,047 + GFF4962 0.64 +1.9 63,047 + GFF4962 0.64 -1.1 63,048 - GFF4962 0.65 +0.5 63,049 + GFF4962 0.65 -0.3 63,049 + GFF4962 0.65 +0.1 63,049 + GFF4962 0.65 +0.2 63,049 + GFF4962 0.65 -0.4 63,050 - GFF4962 0.65 -0.5 63,050 - GFF4962 0.65 -1.1 63,050 - GFF4962 0.65 +0.5 63,050 - GFF4962 0.65 +1.1 63,097 + GFF4962 0.69 +0.7 63,097 + GFF4962 0.69 -0.3 63,097 + GFF4962 0.69 +0.1 63,098 - GFF4962 0.69 -0.9 63,098 - GFF4962 0.69 -1.6 63,098 - GFF4962 0.69 -0.1
Or see this region's nucleotide sequence