Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4869 and GFF4870 overlap by 4 nucleotides GFF4870 and GFF4871 overlap by 4 nucleotides GFF4871 and GFF4872 overlap by 4 nucleotides GFF4872 and GFF4873 overlap by 4 nucleotides
GFF4869 - Type IV secretory pathway, protease TraF, at 241,963 to 242,550
GFF4869
GFF4870 - Glycosidases, at 242,547 to 243,080
GFF4870
GFF4871 - FIG00457034: hypothetical protein, at 243,077 to 243,340
GFF4871
GFF4872 - ParA-like protein, at 243,337 to 243,975
GFF4872
GFF4873 - no description, at 243,972 to 244,178
GFF4873
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.931 kb on + strand at 241.931 kb on + strand at 241.931 kb on + strand at 241.931 kb on + strand at 241.932 kb on - strand at 241.932 kb on - strand at 241.932 kb on - strand at 241.932 kb on - strand at 242.196 kb on + strand, within GFF4869 at 242.196 kb on + strand, within GFF4869 at 242.197 kb on - strand, within GFF4869 at 242.197 kb on - strand, within GFF4869 at 242.258 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.597 kb on - strand at 242.597 kb on - strand at 242.597 kb on - strand at 242.597 kb on - strand at 242.647 kb on + strand, within GFF4870 at 242.842 kb on + strand, within GFF4870 at 242.842 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.954 kb on - strand, within GFF4870 at 242.954 kb on - strand, within GFF4870 at 242.954 kb on - strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 243.143 kb on + strand, within GFF4871 at 243.144 kb on - strand, within GFF4871 at 243.159 kb on - strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.527 kb on - strand, within GFF4872 at 243.527 kb on - strand, within GFF4872 at 243.635 kb on + strand, within GFF4872 at 243.635 kb on + strand, within GFF4872 at 243.636 kb on - strand, within GFF4872 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.064 kb on + strand, within GFF4873 at 244.064 kb on + strand, within GFF4873 at 244.064 kb on + strand, within GFF4873 at 244.065 kb on - strand, within GFF4873 at 244.071 kb on + strand, within GFF4873 at 244.071 kb on + strand, within GFF4873 at 244.071 kb on + strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.080 kb on + strand, within GFF4873
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 241,931 + -1.5 241,931 + +0.2 241,931 + +0.6 241,931 + -0.0 241,932 - +0.3 241,932 - -1.2 241,932 - -0.3 241,932 - -0.3 242,196 + GFF4869 0.40 +0.0 242,196 + GFF4869 0.40 +0.6 242,197 - GFF4869 0.40 +1.9 242,197 - GFF4869 0.40 -0.1 242,258 + GFF4869 0.50 -0.4 242,408 + GFF4869 0.76 +0.1 242,408 + GFF4869 0.76 +0.3 242,408 + GFF4869 0.76 +0.4 242,408 + GFF4869 0.76 +0.2 242,409 - GFF4869 0.76 -0.0 242,409 - GFF4869 0.76 +0.3 242,409 - GFF4869 0.76 -0.0 242,409 - GFF4869 0.76 -0.3 242,409 - GFF4869 0.76 +0.6 242,409 - GFF4869 0.76 -0.5 242,409 - GFF4869 0.76 +0.6 242,409 - GFF4869 0.76 -0.8 242,409 - GFF4869 0.76 -0.1 242,597 - -0.6 242,597 - -0.4 242,597 - -0.3 242,597 - -0.1 242,647 + GFF4870 0.19 +1.0 242,842 + GFF4870 0.55 +1.0 242,842 + GFF4870 0.55 -0.2 242,953 + GFF4870 0.76 -0.0 242,953 + GFF4870 0.76 -0.3 242,953 + GFF4870 0.76 -0.8 242,953 + GFF4870 0.76 -0.4 242,953 + GFF4870 0.76 +0.3 242,954 - GFF4870 0.76 -0.1 242,954 - GFF4870 0.76 +1.3 242,954 - GFF4870 0.76 +0.6 242,977 + GFF4870 0.81 +0.0 242,977 + GFF4870 0.81 +0.5 242,977 + GFF4870 0.81 +1.5 242,977 + GFF4870 0.81 -1.5 242,977 + GFF4870 0.81 +0.5 242,977 + GFF4870 0.81 -0.0 242,977 + GFF4870 0.81 -0.1 242,977 + GFF4870 0.81 +0.1 242,977 + GFF4870 0.81 +0.6 242,977 + GFF4870 0.81 -1.0 242,977 + GFF4870 0.81 -0.2 242,977 + GFF4870 0.81 -0.4 242,977 + GFF4870 0.81 -1.1 242,977 + GFF4870 0.81 -1.0 242,977 + GFF4870 0.81 +0.6 242,977 + GFF4870 0.81 -0.9 242,977 + GFF4870 0.81 +0.2 242,977 + GFF4870 0.81 -0.3 242,977 + GFF4870 0.81 +1.3 242,978 - GFF4870 0.81 -0.4 242,978 - GFF4870 0.81 -0.5 242,978 - GFF4870 0.81 -0.5 242,978 - GFF4870 0.81 +0.2 242,978 - GFF4870 0.81 +0.3 242,978 - GFF4870 0.81 -1.5 242,978 - GFF4870 0.81 +1.6 242,978 - GFF4870 0.81 +0.2 242,978 - GFF4870 0.81 -1.8 242,978 - GFF4870 0.81 -0.2 242,978 - GFF4870 0.81 -1.6 242,978 - GFF4870 0.81 +0.2 243,143 + GFF4871 0.25 -0.2 243,144 - GFF4871 0.25 +1.9 243,159 - GFF4871 0.31 +0.1 243,213 + GFF4871 0.52 -0.0 243,213 + GFF4871 0.52 +0.9 243,213 + GFF4871 0.52 -1.4 243,213 + GFF4871 0.52 +1.0 243,213 + GFF4871 0.52 +0.3 243,527 - GFF4872 0.30 -0.4 243,527 - GFF4872 0.30 -0.9 243,635 + GFF4872 0.47 -0.1 243,635 + GFF4872 0.47 -0.1 243,636 - GFF4872 0.47 -0.7 244,061 + GFF4873 0.43 +1.7 244,061 + GFF4873 0.43 -2.4 244,061 + GFF4873 0.43 +0.3 244,061 + GFF4873 0.43 -0.3 244,061 + GFF4873 0.43 -0.8 244,061 + GFF4873 0.43 +0.1 244,061 + GFF4873 0.43 +0.1 244,061 + GFF4873 0.43 -1.8 244,061 + GFF4873 0.43 -0.4 244,061 + GFF4873 0.43 -0.1 244,061 + GFF4873 0.43 -0.3 244,061 + GFF4873 0.43 -0.3 244,062 - GFF4873 0.43 -0.0 244,062 - GFF4873 0.43 +0.4 244,062 - GFF4873 0.43 -0.0 244,062 - GFF4873 0.43 +1.0 244,062 - GFF4873 0.43 +1.3 244,062 - GFF4873 0.43 -0.1 244,064 + GFF4873 0.44 +0.2 244,064 + GFF4873 0.44 +0.5 244,064 + GFF4873 0.44 +0.7 244,065 - GFF4873 0.45 -0.9 244,071 + GFF4873 0.48 -0.7 244,071 + GFF4873 0.48 -0.3 244,071 + GFF4873 0.48 +1.3 244,072 - GFF4873 0.48 -1.0 244,072 - GFF4873 0.48 -1.8 244,072 - GFF4873 0.48 -0.3 244,072 - GFF4873 0.48 +0.2 244,080 + GFF4873 0.52 -2.3
Or see this region's nucleotide sequence