Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4839 and GFF4840 are separated by 582 nucleotides GFF4840 and GFF4841 overlap by 4 nucleotides GFF4841 and GFF4842 are separated by 2 nucleotides GFF4842 and GFF4843 overlap by 4 nucleotides
GFF4839 - Transcriptional regulator PA2737, MerR family, at 209,239 to 209,706
GFF4839
GFF4840 - FIG00956188: hypothetical protein, at 210,289 to 210,534
GFF4840
GFF4841 - Conjugative transfer protein TrbI, at 210,531 to 211,802
GFF4841
GFF4842 - Conjugative transfer protein TrbG, at 211,805 to 212,800
GFF4842
GFF4843 - Conjugative transfer protein TrbF, at 212,797 to 213,501
GFF4843
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.714 kb on + strand at 209.714 kb on + strand at 209.715 kb on - strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.720 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.818 kb on - strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.937 kb on - strand at 209.937 kb on - strand at 209.937 kb on - strand at 209.950 kb on + strand at 209.951 kb on - strand at 209.951 kb on - strand at 209.951 kb on - strand at 209.951 kb on - strand at 210.065 kb on + strand at 210.065 kb on + strand at 210.065 kb on + strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.072 kb on + strand at 210.073 kb on - strand at 210.073 kb on - strand at 210.073 kb on - strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.125 kb on - strand at 210.125 kb on - strand at 210.125 kb on - strand at 210.135 kb on + strand at 210.135 kb on + strand at 210.135 kb on + strand at 210.136 kb on - strand at 210.136 kb on - strand at 210.152 kb on + strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.197 kb on - strand at 210.197 kb on - strand at 210.197 kb on - strand at 210.407 kb on + strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.432 kb on - strand, within GFF4840 at 210.568 kb on + strand at 210.568 kb on + strand at 210.847 kb on + strand, within GFF4841 at 210.946 kb on + strand, within GFF4841 at 210.946 kb on + strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.025 kb on - strand, within GFF4841 at 211.123 kb on + strand, within GFF4841 at 211.124 kb on - strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.911 kb on + strand, within GFF4842 at 211.911 kb on + strand, within GFF4842 at 211.912 kb on - strand, within GFF4842 at 211.929 kb on + strand, within GFF4842 at 211.930 kb on - strand, within GFF4842 at 211.930 kb on - strand, within GFF4842 at 211.930 kb on - strand, within GFF4842 at 212.014 kb on + strand, within GFF4842 at 212.014 kb on + strand, within GFF4842 at 212.015 kb on - strand, within GFF4842 at 212.015 kb on - strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.184 kb on + strand, within GFF4842 at 212.184 kb on + strand, within GFF4842 at 212.185 kb on - strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.242 kb on - strand, within GFF4842 at 212.363 kb on + strand, within GFF4842 at 212.364 kb on - strand, within GFF4842 at 212.432 kb on + strand, within GFF4842 at 212.442 kb on + strand, within GFF4842 at 212.442 kb on + strand, within GFF4842 at 212.443 kb on - strand, within GFF4842 at 212.443 kb on - strand, within GFF4842 at 212.451 kb on + strand, within GFF4842 at 212.451 kb on + strand, within GFF4842 at 212.452 kb on - strand, within GFF4842 at 212.496 kb on + strand, within GFF4842 at 212.496 kb on + strand, within GFF4842 at 212.496 kb on + strand, within GFF4842 at 212.497 kb on - strand, within GFF4842 at 212.497 kb on - strand, within GFF4842 at 212.682 kb on - strand, within GFF4842 at 212.682 kb on - strand, within GFF4842 at 212.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 209,714 + -0.3 209,714 + -0.4 209,715 - +0.1 209,718 + -0.9 209,718 + +0.1 209,718 + +0.2 209,718 + +0.3 209,718 + -1.8 209,718 + -0.1 209,718 + -0.3 209,718 + -1.0 209,719 - +1.3 209,719 - -0.0 209,719 - -0.1 209,719 - -1.0 209,719 - -1.0 209,719 - -0.4 209,719 - -0.8 209,719 - -0.4 209,719 - -0.0 209,719 - -0.3 209,719 - -0.9 209,719 - -0.7 209,720 + -0.3 209,817 + +1.1 209,817 + -1.3 209,817 + +0.3 209,817 + -1.2 209,817 + +0.6 209,818 - -1.0 209,821 + +1.7 209,821 + -0.5 209,821 + -0.5 209,821 + -0.6 209,821 + -0.4 209,821 + -0.1 209,821 + +0.3 209,821 + -0.4 209,821 + +0.4 209,821 + +1.3 209,821 + -0.7 209,821 + +0.7 209,821 + -1.2 209,821 + +0.4 209,821 + +0.3 209,822 - -0.5 209,822 - +0.6 209,822 - +0.8 209,822 - +0.1 209,822 - +0.3 209,822 - -1.0 209,822 - +0.3 209,822 - +0.1 209,936 + +2.3 209,936 + +0.4 209,936 + -0.1 209,936 + -0.2 209,936 + +0.3 209,937 - +0.6 209,937 - +0.2 209,937 - +0.3 209,950 + +1.3 209,951 - +0.2 209,951 - +0.2 209,951 - -0.1 209,951 - -0.4 210,065 + -0.4 210,065 + -0.2 210,065 + +0.2 210,066 - -0.2 210,066 - -0.3 210,066 - -0.7 210,072 + -0.3 210,073 - +1.0 210,073 - -0.7 210,073 - +0.2 210,075 + -0.3 210,075 + -0.6 210,075 + -0.1 210,075 + -0.4 210,075 + -0.8 210,075 + -0.3 210,075 + -1.1 210,075 + -0.1 210,075 + -0.1 210,075 + -1.3 210,075 + -0.1 210,075 + -1.0 210,075 + -0.4 210,075 + -0.0 210,075 + -0.1 210,075 + -0.1 210,075 + -0.5 210,075 + -0.4 210,076 - -0.4 210,076 - +0.2 210,076 - +0.9 210,076 - +0.2 210,076 - +0.1 210,076 - +1.1 210,076 - +0.0 210,076 - -0.3 210,076 - -0.2 210,076 - +0.1 210,076 - +0.5 210,076 - -2.4 210,124 + +0.1 210,124 + -1.3 210,124 + +0.3 210,124 + +0.1 210,124 + -0.2 210,124 + -0.7 210,124 + +1.5 210,125 - +0.1 210,125 - -0.5 210,125 - -0.2 210,135 + -0.0 210,135 + -0.3 210,135 + -0.5 210,136 - +0.0 210,136 - +0.3 210,152 + -0.3 210,153 - -0.0 210,153 - -0.7 210,196 + +1.0 210,196 + +0.6 210,196 + +0.2 210,196 + -0.5 210,197 - -0.5 210,197 - -0.7 210,197 - +0.8 210,407 + GFF4840 0.48 -0.3 210,408 - GFF4840 0.48 -0.1 210,408 - GFF4840 0.48 -1.3 210,408 - GFF4840 0.48 -0.5 210,432 - GFF4840 0.58 -0.4 210,568 + -0.7 210,568 + -1.1 210,847 + GFF4841 0.25 +0.9 210,946 + GFF4841 0.33 -0.8 210,946 + GFF4841 0.33 -0.4 210,947 - GFF4841 0.33 -0.1 210,947 - GFF4841 0.33 +0.0 210,947 - GFF4841 0.33 -0.8 210,947 - GFF4841 0.33 +0.2 210,947 - GFF4841 0.33 +0.3 210,947 - GFF4841 0.33 +0.4 210,964 + GFF4841 0.34 -0.3 210,964 + GFF4841 0.34 -0.1 210,964 + GFF4841 0.34 -0.0 210,964 + GFF4841 0.34 +1.4 210,964 + GFF4841 0.34 +0.7 210,964 + GFF4841 0.34 -0.3 210,964 + GFF4841 0.34 +1.1 210,965 - GFF4841 0.34 +0.8 210,965 - GFF4841 0.34 +0.7 210,965 - GFF4841 0.34 -0.0 210,965 - GFF4841 0.34 -0.4 210,965 - GFF4841 0.34 -1.4 210,965 - GFF4841 0.34 -0.1 211,024 + GFF4841 0.39 +0.2 211,024 + GFF4841 0.39 -0.1 211,024 + GFF4841 0.39 -0.6 211,024 + GFF4841 0.39 -0.1 211,024 + GFF4841 0.39 +1.0 211,025 - GFF4841 0.39 -0.0 211,123 + GFF4841 0.47 +0.6 211,124 - GFF4841 0.47 +0.5 211,435 + GFF4841 0.71 +1.7 211,435 + GFF4841 0.71 +0.1 211,435 + GFF4841 0.71 -0.3 211,436 - GFF4841 0.71 +0.6 211,436 - GFF4841 0.71 +0.3 211,436 - GFF4841 0.71 +0.5 211,436 - GFF4841 0.71 +0.2 211,436 - GFF4841 0.71 -0.2 211,436 - GFF4841 0.71 -0.1 211,436 - GFF4841 0.71 -0.3 211,436 - GFF4841 0.71 -0.9 211,588 + GFF4841 0.83 +0.5 211,588 + GFF4841 0.83 +0.6 211,588 + GFF4841 0.83 -1.3 211,588 + GFF4841 0.83 +1.8 211,588 + GFF4841 0.83 +0.8 211,588 + GFF4841 0.83 +0.4 211,588 + GFF4841 0.83 +1.3 211,588 + GFF4841 0.83 -0.0 211,588 + GFF4841 0.83 +0.5 211,752 + +0.2 211,752 + +0.4 211,752 + -0.7 211,752 + +1.0 211,752 + +0.3 211,752 + -1.0 211,752 + -0.0 211,752 + +1.3 211,753 - +0.2 211,753 - -1.7 211,753 - +0.6 211,753 - +0.2 211,753 - +0.9 211,753 - -0.0 211,753 - -2.3 211,753 - +0.2 211,753 - +0.4 211,753 - +0.5 211,908 + GFF4842 0.10 -0.7 211,908 + GFF4842 0.10 +0.4 211,908 + GFF4842 0.10 +1.5 211,908 + GFF4842 0.10 -1.3 211,908 + GFF4842 0.10 +0.3 211,908 + GFF4842 0.10 +0.1 211,908 + GFF4842 0.10 +0.5 211,908 + GFF4842 0.10 -1.2 211,908 + GFF4842 0.10 -0.1 211,909 - GFF4842 0.10 +0.1 211,909 - GFF4842 0.10 -1.5 211,909 - GFF4842 0.10 -1.7 211,909 - GFF4842 0.10 -0.0 211,909 - GFF4842 0.10 +0.3 211,909 - GFF4842 0.10 +0.6 211,909 - GFF4842 0.10 -0.3 211,911 + GFF4842 0.11 +0.8 211,911 + GFF4842 0.11 +0.5 211,912 - GFF4842 0.11 -0.7 211,929 + GFF4842 0.12 +1.1 211,930 - GFF4842 0.13 +0.3 211,930 - GFF4842 0.13 -0.8 211,930 - GFF4842 0.13 -0.1 212,014 + GFF4842 0.21 +0.0 212,014 + GFF4842 0.21 -0.2 212,015 - GFF4842 0.21 +0.6 212,015 - GFF4842 0.21 +0.3 212,016 + GFF4842 0.21 +0.7 212,016 + GFF4842 0.21 -0.5 212,016 + GFF4842 0.21 -0.6 212,016 + GFF4842 0.21 +0.3 212,016 + GFF4842 0.21 +0.1 212,016 + GFF4842 0.21 -0.7 212,016 + GFF4842 0.21 +0.4 212,016 + GFF4842 0.21 -1.0 212,016 + GFF4842 0.21 -0.0 212,016 + GFF4842 0.21 -0.3 212,016 + GFF4842 0.21 -0.7 212,017 - GFF4842 0.21 -1.3 212,017 - GFF4842 0.21 -0.2 212,017 - GFF4842 0.21 -0.0 212,017 - GFF4842 0.21 +0.7 212,017 - GFF4842 0.21 +1.3 212,017 - GFF4842 0.21 +0.7 212,184 + GFF4842 0.38 -0.6 212,184 + GFF4842 0.38 +0.3 212,185 - GFF4842 0.38 -0.9 212,241 + GFF4842 0.44 +0.5 212,241 + GFF4842 0.44 +0.1 212,241 + GFF4842 0.44 +0.5 212,241 + GFF4842 0.44 -0.1 212,242 - GFF4842 0.44 -0.7 212,363 + GFF4842 0.56 +0.7 212,364 - GFF4842 0.56 -0.3 212,432 + GFF4842 0.63 -0.8 212,442 + GFF4842 0.64 -0.7 212,442 + GFF4842 0.64 -1.7 212,443 - GFF4842 0.64 +0.3 212,443 - GFF4842 0.64 -0.0 212,451 + GFF4842 0.65 +0.6 212,451 + GFF4842 0.65 -1.0 212,452 - GFF4842 0.65 +1.3 212,496 + GFF4842 0.69 +0.8 212,496 + GFF4842 0.69 -0.8 212,496 + GFF4842 0.69 -0.1 212,497 - GFF4842 0.69 -0.4 212,497 - GFF4842 0.69 +0.2 212,682 - GFF4842 0.88 -0.1 212,682 - GFF4842 0.88 +0.5 212,783 - +0.5
Or see this region's nucleotide sequence