Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4813 and GFF4814 are separated by 8 nucleotides GFF4814 and GFF4815 are separated by 7 nucleotides
GFF4813 - Sugar phosphate isomerases/epimerase, at 184,217 to 185,095
GFF4813
GFF4814 - Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism, at 185,104 to 186,291
GFF4814
GFF4815 - Glucose-fructose oxidoreductase (EC 1.1.99.28), at 186,299 to 187,474
GFF4815
Position (kb) 185
186
187 Strain fitness (log2 ratio) -2
-1
0
1 at 184.418 kb on - strand, within GFF4813 at 184.418 kb on - strand, within GFF4813 at 184.437 kb on + strand, within GFF4813 at 184.506 kb on + strand, within GFF4813 at 184.506 kb on + strand, within GFF4813 at 184.507 kb on - strand, within GFF4813 at 184.507 kb on - strand, within GFF4813 at 184.507 kb on - strand, within GFF4813 at 184.507 kb on - strand, within GFF4813 at 184.723 kb on - strand, within GFF4813 at 184.881 kb on + strand, within GFF4813 at 185.306 kb on + strand, within GFF4814 at 185.307 kb on - strand, within GFF4814 at 185.514 kb on - strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.769 kb on - strand, within GFF4814 at 185.780 kb on + strand, within GFF4814 at 186.243 kb on - strand at 186.405 kb on + strand at 186.468 kb on + strand, within GFF4815 at 186.468 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.751 kb on - strand, within GFF4815 at 187.147 kb on - strand, within GFF4815
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 184,418 - GFF4813 0.23 -0.7 184,418 - GFF4813 0.23 -1.1 184,437 + GFF4813 0.25 -0.2 184,506 + GFF4813 0.33 +0.5 184,506 + GFF4813 0.33 -0.1 184,507 - GFF4813 0.33 +0.0 184,507 - GFF4813 0.33 -0.1 184,507 - GFF4813 0.33 -0.2 184,507 - GFF4813 0.33 -0.9 184,723 - GFF4813 0.58 -0.0 184,881 + GFF4813 0.76 -1.0 185,306 + GFF4814 0.17 -0.5 185,307 - GFF4814 0.17 +0.8 185,514 - GFF4814 0.35 -1.9 185,534 + GFF4814 0.36 -0.0 185,534 + GFF4814 0.36 -0.3 185,534 + GFF4814 0.36 -1.3 185,534 + GFF4814 0.36 -0.3 185,534 + GFF4814 0.36 -0.2 185,535 - GFF4814 0.36 -0.6 185,535 - GFF4814 0.36 -0.1 185,535 - GFF4814 0.36 -0.2 185,535 - GFF4814 0.36 -1.0 185,769 - GFF4814 0.56 -0.3 185,780 + GFF4814 0.57 -0.5 186,243 - +1.3 186,405 + -1.3 186,468 + GFF4815 0.14 -0.4 186,468 + GFF4815 0.14 -1.0 186,750 + GFF4815 0.38 -1.5 186,750 + GFF4815 0.38 -0.0 186,751 - GFF4815 0.38 -1.2 187,147 - GFF4815 0.72 -0.2
Or see this region's nucleotide sequence