Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4791 and GFF4792 overlap by 4 nucleotides GFF4792 and GFF4793 are separated by 168 nucleotides
GFF4791 - RNA polymerase ECF-type sigma factor, at 161,399 to 162,634
GFF4791
GFF4792 - PhnB protein, at 162,631 to 162,993
GFF4792
GFF4793 - Homoserine dehydrogenase (EC 1.1.1.3), at 163,162 to 164,523
GFF4793
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.676 kb on + strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.761 kb on - strand, within GFF4791 at 161.761 kb on - strand, within GFF4791 at 161.865 kb on + strand, within GFF4791 at 161.865 kb on + strand, within GFF4791 at 161.866 kb on - strand, within GFF4791 at 161.866 kb on - strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.580 kb on - strand at 162.580 kb on - strand at 162.752 kb on + strand, within GFF4792 at 162.753 kb on - strand, within GFF4792 at 162.900 kb on - strand, within GFF4792 at 162.921 kb on - strand, within GFF4792 at 162.921 kb on - strand, within GFF4792 at 162.952 kb on + strand, within GFF4792 at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 163.223 kb on + strand at 163.223 kb on + strand at 163.224 kb on - strand at 163.224 kb on - strand at 163.224 kb on - strand at 163.224 kb on - strand at 163.380 kb on - strand, within GFF4793 at 163.541 kb on + strand, within GFF4793 at 163.542 kb on - strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.583 kb on + strand, within GFF4793 at 163.583 kb on + strand, within GFF4793 at 163.584 kb on - strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.608 kb on - strand, within GFF4793 at 163.655 kb on + strand, within GFF4793 at 163.655 kb on + strand, within GFF4793 at 163.655 kb on + strand, within GFF4793 at 163.655 kb on + strand, within GFF4793 at 163.781 kb on + strand, within GFF4793 at 163.925 kb on + strand, within GFF4793 at 163.925 kb on + strand, within GFF4793 at 163.925 kb on + strand, within GFF4793 at 163.925 kb on + strand, within GFF4793 at 163.925 kb on + strand, within GFF4793 at 163.926 kb on - strand, within GFF4793
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 161,676 + GFF4791 0.22 -0.1 161,677 - GFF4791 0.22 -2.5 161,677 - GFF4791 0.22 +0.3 161,677 - GFF4791 0.22 +1.9 161,761 - GFF4791 0.29 +0.7 161,761 - GFF4791 0.29 +0.0 161,865 + GFF4791 0.38 -0.4 161,865 + GFF4791 0.38 +0.3 161,866 - GFF4791 0.38 +0.3 161,866 - GFF4791 0.38 +1.1 162,060 + GFF4791 0.53 -0.1 162,060 + GFF4791 0.53 -0.2 162,060 + GFF4791 0.53 -0.4 162,060 + GFF4791 0.53 +0.4 162,060 + GFF4791 0.53 +0.1 162,060 + GFF4791 0.53 +0.0 162,060 + GFF4791 0.53 -0.1 162,061 - GFF4791 0.54 -0.4 162,061 - GFF4791 0.54 +0.7 162,061 - GFF4791 0.54 +0.1 162,580 - -0.4 162,580 - +0.3 162,752 + GFF4792 0.33 +2.9 162,753 - GFF4792 0.34 +0.4 162,900 - GFF4792 0.74 -0.9 162,921 - GFF4792 0.80 +0.4 162,921 - GFF4792 0.80 +0.3 162,952 + GFF4792 0.88 +2.5 162,971 + +0.5 162,971 + -0.4 162,971 + +0.1 162,971 + +0.1 162,971 + -0.3 162,971 + +0.0 162,971 + -0.2 162,972 - -0.3 162,972 - -0.4 162,972 - +0.6 162,972 - +1.3 162,972 - -0.6 162,972 - -0.3 162,972 - -0.1 162,972 - +0.1 162,986 + +0.9 162,986 + -0.3 162,986 + -0.5 162,986 + +0.1 162,986 + +2.6 162,986 + -0.0 162,986 + -0.6 162,986 + -0.2 162,986 + -1.1 162,986 + +0.1 162,986 + -0.7 162,986 + -1.0 162,986 + +0.7 162,986 + -1.6 162,986 + +0.7 162,986 + +0.2 162,986 + +1.3 162,986 + -1.7 162,986 + +0.8 162,986 + -0.1 162,987 - -1.1 162,987 - -1.7 162,987 - -0.4 162,987 - +0.4 162,987 - -0.2 162,987 - +0.7 162,987 - -0.4 162,987 - -0.4 162,987 - -0.7 162,987 - +0.7 162,987 - +0.3 162,987 - -0.4 162,987 - -0.3 162,987 - -0.3 162,987 - -0.1 162,987 - -1.4 162,987 - -0.8 162,987 - -0.5 162,987 - -0.4 162,987 - +0.0 163,223 + -0.3 163,223 + +0.6 163,224 - -0.4 163,224 - -0.4 163,224 - -0.4 163,224 - +0.8 163,380 - GFF4793 0.16 -0.2 163,541 + GFF4793 0.28 +0.1 163,542 - GFF4793 0.28 +0.4 163,553 + GFF4793 0.29 -0.3 163,553 + GFF4793 0.29 +0.6 163,553 + GFF4793 0.29 -0.1 163,553 + GFF4793 0.29 +0.2 163,583 + GFF4793 0.31 -1.8 163,583 + GFF4793 0.31 -0.2 163,584 - GFF4793 0.31 +0.5 163,607 + GFF4793 0.33 +0.2 163,607 + GFF4793 0.33 +0.6 163,607 + GFF4793 0.33 +1.3 163,607 + GFF4793 0.33 -0.3 163,608 - GFF4793 0.33 -0.3 163,655 + GFF4793 0.36 -0.7 163,655 + GFF4793 0.36 -0.1 163,655 + GFF4793 0.36 -0.3 163,655 + GFF4793 0.36 +0.2 163,781 + GFF4793 0.45 +0.2 163,925 + GFF4793 0.56 +0.1 163,925 + GFF4793 0.56 -0.4 163,925 + GFF4793 0.56 +0.7 163,925 + GFF4793 0.56 -0.7 163,925 + GFF4793 0.56 -0.8 163,926 - GFF4793 0.56 +0.4
Or see this region's nucleotide sequence