Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4789 and GFF4790 are separated by 87 nucleotides GFF4790 and GFF4791 are separated by 5 nucleotides GFF4791 and GFF4792 overlap by 4 nucleotides GFF4792 and GFF4793 are separated by 168 nucleotides
GFF4789 - FIG01126746: hypothetical protein, at 159,963 to 160,580
GFF4789
GFF4790 - Nudix-related transcriptional regulator NrtR, at 160,668 to 161,393
GFF4790
GFF4791 - RNA polymerase ECF-type sigma factor, at 161,399 to 162,634
GFF4791
GFF4792 - PhnB protein, at 162,631 to 162,993
GFF4792
GFF4793 - Homoserine dehydrogenase (EC 1.1.1.3), at 163,162 to 164,523
GFF4793
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 160.435 kb on + strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.466 kb on - strand, within GFF4789 at 160.611 kb on + strand at 160.612 kb on - strand at 160.617 kb on + strand at 160.618 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.633 kb on - strand at 160.636 kb on - strand at 160.918 kb on - strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.391 kb on + strand at 161.391 kb on + strand at 161.391 kb on + strand at 161.392 kb on - strand at 161.392 kb on - strand at 161.427 kb on + strand at 161.427 kb on + strand at 161.428 kb on - strand at 161.473 kb on - strand at 161.544 kb on + strand, within GFF4791 at 161.676 kb on + strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.761 kb on - strand, within GFF4791 at 161.761 kb on - strand, within GFF4791 at 161.865 kb on + strand, within GFF4791 at 161.865 kb on + strand, within GFF4791 at 161.866 kb on - strand, within GFF4791 at 161.866 kb on - strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.580 kb on - strand at 162.580 kb on - strand at 162.752 kb on + strand, within GFF4792 at 162.753 kb on - strand, within GFF4792 at 162.900 kb on - strand, within GFF4792 at 162.921 kb on - strand, within GFF4792 at 162.921 kb on - strand, within GFF4792 at 162.952 kb on + strand, within GFF4792 at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.971 kb on + strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.972 kb on - strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.986 kb on + strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 162.987 kb on - strand at 163.223 kb on + strand at 163.223 kb on + strand at 163.224 kb on - strand at 163.224 kb on - strand at 163.224 kb on - strand at 163.224 kb on - strand at 163.380 kb on - strand, within GFF4793 at 163.541 kb on + strand, within GFF4793 at 163.542 kb on - strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.553 kb on + strand, within GFF4793 at 163.583 kb on + strand, within GFF4793 at 163.583 kb on + strand, within GFF4793 at 163.584 kb on - strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.607 kb on + strand, within GFF4793 at 163.608 kb on - strand, within GFF4793
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 160,435 + GFF4789 0.76 -0.7 160,435 + GFF4789 0.76 -0.1 160,466 - GFF4789 0.81 -1.3 160,611 + +0.3 160,612 - -0.3 160,617 + -0.0 160,618 - -0.0 160,630 + +0.2 160,630 + +0.0 160,630 + -1.0 160,630 + -0.1 160,630 + +0.3 160,631 - +1.3 160,631 - +0.4 160,631 - +0.7 160,631 - +0.7 160,631 - -0.5 160,633 - +0.1 160,636 - -0.0 160,918 - GFF4790 0.34 -1.4 160,989 + GFF4790 0.44 -0.6 160,989 + GFF4790 0.44 -0.6 160,989 + GFF4790 0.44 -1.4 160,989 + GFF4790 0.44 -0.5 160,990 - GFF4790 0.44 -1.0 160,990 - GFF4790 0.44 -1.0 160,990 - GFF4790 0.44 -2.3 161,148 + GFF4790 0.66 -0.2 161,148 + GFF4790 0.66 -1.6 161,148 + GFF4790 0.66 +0.2 161,148 + GFF4790 0.66 -0.8 161,149 - GFF4790 0.66 +0.3 161,149 - GFF4790 0.66 -0.3 161,211 + GFF4790 0.75 -0.8 161,211 + GFF4790 0.75 +0.1 161,211 + GFF4790 0.75 -0.1 161,211 + GFF4790 0.75 +0.6 161,211 + GFF4790 0.75 -0.5 161,212 - GFF4790 0.75 -1.1 161,212 - GFF4790 0.75 -0.8 161,212 - GFF4790 0.75 -0.6 161,212 - GFF4790 0.75 +0.6 161,391 + -2.1 161,391 + +0.3 161,391 + -1.3 161,392 - -0.2 161,392 - +0.2 161,427 + +1.1 161,427 + -0.2 161,428 - -0.2 161,473 - -0.1 161,544 + GFF4791 0.12 +0.4 161,676 + GFF4791 0.22 -0.1 161,677 - GFF4791 0.22 -2.5 161,677 - GFF4791 0.22 +0.3 161,677 - GFF4791 0.22 +1.9 161,761 - GFF4791 0.29 +0.7 161,761 - GFF4791 0.29 +0.0 161,865 + GFF4791 0.38 -0.4 161,865 + GFF4791 0.38 +0.3 161,866 - GFF4791 0.38 +0.3 161,866 - GFF4791 0.38 +1.1 162,060 + GFF4791 0.53 -0.1 162,060 + GFF4791 0.53 -0.2 162,060 + GFF4791 0.53 -0.4 162,060 + GFF4791 0.53 +0.4 162,060 + GFF4791 0.53 +0.1 162,060 + GFF4791 0.53 +0.0 162,060 + GFF4791 0.53 -0.1 162,061 - GFF4791 0.54 -0.4 162,061 - GFF4791 0.54 +0.7 162,061 - GFF4791 0.54 +0.1 162,580 - -0.4 162,580 - +0.3 162,752 + GFF4792 0.33 +2.9 162,753 - GFF4792 0.34 +0.4 162,900 - GFF4792 0.74 -0.9 162,921 - GFF4792 0.80 +0.4 162,921 - GFF4792 0.80 +0.3 162,952 + GFF4792 0.88 +2.5 162,971 + +0.5 162,971 + -0.4 162,971 + +0.1 162,971 + +0.1 162,971 + -0.3 162,971 + +0.0 162,971 + -0.2 162,972 - -0.3 162,972 - -0.4 162,972 - +0.6 162,972 - +1.3 162,972 - -0.6 162,972 - -0.3 162,972 - -0.1 162,972 - +0.1 162,986 + +0.9 162,986 + -0.3 162,986 + -0.5 162,986 + +0.1 162,986 + +2.6 162,986 + -0.0 162,986 + -0.6 162,986 + -0.2 162,986 + -1.1 162,986 + +0.1 162,986 + -0.7 162,986 + -1.0 162,986 + +0.7 162,986 + -1.6 162,986 + +0.7 162,986 + +0.2 162,986 + +1.3 162,986 + -1.7 162,986 + +0.8 162,986 + -0.1 162,987 - -1.1 162,987 - -1.7 162,987 - -0.4 162,987 - +0.4 162,987 - -0.2 162,987 - +0.7 162,987 - -0.4 162,987 - -0.4 162,987 - -0.7 162,987 - +0.7 162,987 - +0.3 162,987 - -0.4 162,987 - -0.3 162,987 - -0.3 162,987 - -0.1 162,987 - -1.4 162,987 - -0.8 162,987 - -0.5 162,987 - -0.4 162,987 - +0.0 163,223 + -0.3 163,223 + +0.6 163,224 - -0.4 163,224 - -0.4 163,224 - -0.4 163,224 - +0.8 163,380 - GFF4793 0.16 -0.2 163,541 + GFF4793 0.28 +0.1 163,542 - GFF4793 0.28 +0.4 163,553 + GFF4793 0.29 -0.3 163,553 + GFF4793 0.29 +0.6 163,553 + GFF4793 0.29 -0.1 163,553 + GFF4793 0.29 +0.2 163,583 + GFF4793 0.31 -1.8 163,583 + GFF4793 0.31 -0.2 163,584 - GFF4793 0.31 +0.5 163,607 + GFF4793 0.33 +0.2 163,607 + GFF4793 0.33 +0.6 163,607 + GFF4793 0.33 +1.3 163,607 + GFF4793 0.33 -0.3 163,608 - GFF4793 0.33 -0.3
Or see this region's nucleotide sequence