Strain Fitness in Variovorax sp. SCN45 around GFF4783

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4782 and GFF4783 are separated by 108 nucleotidesGFF4783 and GFF4784 are separated by 104 nucleotides GFF4782 - Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II), at 149,469 to 150,545 GFF4782 GFF4783 - Penicillin acylase (EC 3.5.1.11), at 150,654 to 153,146 GFF4783 GFF4784 - no description, at 153,251 to 154,306 GFF4784 Position (kb) 150 151 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 149.851 kb on + strand, within GFF4782at 149.851 kb on + strand, within GFF4782at 149.851 kb on + strand, within GFF4782at 149.852 kb on - strand, within GFF4782at 149.921 kb on - strand, within GFF4782at 150.064 kb on + strand, within GFF4782at 150.064 kb on + strand, within GFF4782at 150.064 kb on + strand, within GFF4782at 150.065 kb on - strand, within GFF4782at 150.082 kb on + strand, within GFF4782at 150.082 kb on + strand, within GFF4782at 150.082 kb on + strand, within GFF4782at 150.083 kb on - strand, within GFF4782at 150.083 kb on - strand, within GFF4782at 150.083 kb on - strand, within GFF4782at 150.124 kb on + strand, within GFF4782at 150.124 kb on + strand, within GFF4782at 150.124 kb on + strand, within GFF4782at 150.124 kb on + strand, within GFF4782at 150.166 kb on + strand, within GFF4782at 150.167 kb on - strand, within GFF4782at 150.250 kb on + strand, within GFF4782at 150.250 kb on + strand, within GFF4782at 150.332 kb on - strand, within GFF4782at 150.332 kb on - strand, within GFF4782at 150.400 kb on + strand, within GFF4782at 150.401 kb on - strand, within GFF4782at 150.401 kb on - strand, within GFF4782at 150.472 kb on + strandat 150.472 kb on + strandat 150.472 kb on + strandat 150.534 kb on + strandat 150.534 kb on + strandat 150.534 kb on + strandat 150.545 kb on + strandat 150.560 kb on - strandat 150.560 kb on - strandat 150.579 kb on + strandat 150.579 kb on + strandat 150.613 kb on + strandat 150.858 kb on + strandat 150.858 kb on + strandat 150.859 kb on - strandat 150.974 kb on - strand, within GFF4783at 151.020 kb on + strand, within GFF4783at 151.020 kb on + strand, within GFF4783at 151.021 kb on - strand, within GFF4783at 151.021 kb on - strand, within GFF4783at 151.038 kb on + strand, within GFF4783at 151.093 kb on - strand, within GFF4783at 151.447 kb on + strand, within GFF4783at 151.448 kb on - strand, within GFF4783at 151.620 kb on + strand, within GFF4783at 151.693 kb on + strand, within GFF4783at 151.734 kb on + strand, within GFF4783at 151.734 kb on + strand, within GFF4783at 151.735 kb on - strand, within GFF4783at 151.755 kb on + strand, within GFF4783at 151.755 kb on + strand, within GFF4783at 151.755 kb on + strand, within GFF4783at 151.755 kb on + strand, within GFF4783at 151.756 kb on - strand, within GFF4783at 151.797 kb on + strand, within GFF4783at 151.798 kb on - strand, within GFF4783at 151.798 kb on - strand, within GFF4783at 151.798 kb on - strand, within GFF4783at 151.935 kb on + strand, within GFF4783at 151.936 kb on - strand, within GFF4783at 151.977 kb on + strand, within GFF4783at 151.977 kb on + strand, within GFF4783at 151.995 kb on + strand, within GFF4783at 151.995 kb on + strand, within GFF4783at 151.995 kb on + strand, within GFF4783at 151.996 kb on - strand, within GFF4783at 151.996 kb on - strand, within GFF4783at 152.070 kb on + strand, within GFF4783at 152.070 kb on + strand, within GFF4783at 152.071 kb on - strand, within GFF4783at 152.232 kb on + strand, within GFF4783at 152.233 kb on - strand, within GFF4783at 152.233 kb on - strand, within GFF4783at 152.233 kb on - strand, within GFF4783at 152.299 kb on - strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.548 kb on - strand, within GFF4783at 152.548 kb on - strand, within GFF4783at 152.548 kb on - strand, within GFF4783at 152.907 kb on + strandat 152.908 kb on - strandat 152.908 kb on - strandat 152.923 kb on - strandat 152.923 kb on - strandat 153.033 kb on + strandat 153.034 kb on - strandat 153.069 kb on + strandat 153.069 kb on + strandat 153.069 kb on + strandat 153.069 kb on + strandat 153.070 kb on - strandat 153.070 kb on - strandat 153.070 kb on - strandat 153.084 kb on + strandat 153.085 kb on - strandat 153.144 kb on + strandat 153.213 kb on + strandat 153.307 kb on + strandat 153.307 kb on + strandat 153.307 kb on + strandat 153.410 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.485 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.582 kb on - strand, within GFF4784at 153.582 kb on - strand, within GFF4784at 153.655 kb on + strand, within GFF4784at 153.665 kb on + strand, within GFF4784at 153.666 kb on - strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.679 kb on + strand, within GFF4784at 153.681 kb on + strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.803 kb on + strand, within GFF4784at 153.804 kb on - strand, within GFF4784at 153.997 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.011 kb on - strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.065 kb on - strand, within GFF4784at 154.144 kb on + strand, within GFF4784at 154.145 kb on - strand, within GFF4784

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
149,851 + GFF4782 0.35 -0.3
149,851 + GFF4782 0.35 -0.3
149,851 + GFF4782 0.35 +0.1
149,852 - GFF4782 0.36 -0.6
149,921 - GFF4782 0.42 -0.8
150,064 + GFF4782 0.55 +0.3
150,064 + GFF4782 0.55 +0.7
150,064 + GFF4782 0.55 -0.2
150,065 - GFF4782 0.55 -0.1
150,082 + GFF4782 0.57 +0.8
150,082 + GFF4782 0.57 +0.5
150,082 + GFF4782 0.57 -0.3
150,083 - GFF4782 0.57 +0.2
150,083 - GFF4782 0.57 -0.6
150,083 - GFF4782 0.57 -0.0
150,124 + GFF4782 0.61 -1.3
150,124 + GFF4782 0.61 -0.3
150,124 + GFF4782 0.61 -0.4
150,124 + GFF4782 0.61 -1.2
150,166 + GFF4782 0.65 +0.1
150,167 - GFF4782 0.65 -0.3
150,250 + GFF4782 0.73 -0.2
150,250 + GFF4782 0.73 -1.3
150,332 - GFF4782 0.80 -1.2
150,332 - GFF4782 0.80 -0.7
150,400 + GFF4782 0.86 -1.6
150,401 - GFF4782 0.87 -2.0
150,401 - GFF4782 0.87 -0.5
150,472 + +1.3
150,472 + +0.7
150,472 + -1.0
150,534 + -0.6
150,534 + +1.3
150,534 + +0.2
150,545 + +0.6
150,560 - -0.3
150,560 - -0.5
150,579 + -0.3
150,579 + -0.4
150,613 + -0.1
150,858 + -1.3
150,858 + -0.4
150,859 - -0.8
150,974 - GFF4783 0.13 +0.2
151,020 + GFF4783 0.15 +0.5
151,020 + GFF4783 0.15 +0.0
151,021 - GFF4783 0.15 -0.3
151,021 - GFF4783 0.15 -1.6
151,038 + GFF4783 0.15 -0.2
151,093 - GFF4783 0.18 -0.0
151,447 + GFF4783 0.32 -0.9
151,448 - GFF4783 0.32 +0.2
151,620 + GFF4783 0.39 -0.6
151,693 + GFF4783 0.42 -0.0
151,734 + GFF4783 0.43 -0.1
151,734 + GFF4783 0.43 +0.1
151,735 - GFF4783 0.43 +0.5
151,755 + GFF4783 0.44 -0.1
151,755 + GFF4783 0.44 -0.3
151,755 + GFF4783 0.44 -0.1
151,755 + GFF4783 0.44 -0.1
151,756 - GFF4783 0.44 +0.3
151,797 + GFF4783 0.46 +0.1
151,798 - GFF4783 0.46 -0.4
151,798 - GFF4783 0.46 +0.4
151,798 - GFF4783 0.46 -1.0
151,935 + GFF4783 0.51 -0.1
151,936 - GFF4783 0.51 +0.7
151,977 + GFF4783 0.53 +0.2
151,977 + GFF4783 0.53 -0.3
151,995 + GFF4783 0.54 -0.1
151,995 + GFF4783 0.54 -0.7
151,995 + GFF4783 0.54 +0.7
151,996 - GFF4783 0.54 -0.0
151,996 - GFF4783 0.54 +0.3
152,070 + GFF4783 0.57 -0.0
152,070 + GFF4783 0.57 +0.3
152,071 - GFF4783 0.57 +0.0
152,232 + GFF4783 0.63 -0.3
152,233 - GFF4783 0.63 -0.3
152,233 - GFF4783 0.63 -0.5
152,233 - GFF4783 0.63 -0.6
152,299 - GFF4783 0.66 +0.1
152,547 + GFF4783 0.76 -0.1
152,547 + GFF4783 0.76 +0.3
152,547 + GFF4783 0.76 +0.6
152,547 + GFF4783 0.76 -0.0
152,547 + GFF4783 0.76 -1.6
152,547 + GFF4783 0.76 -0.1
152,548 - GFF4783 0.76 +1.2
152,548 - GFF4783 0.76 -0.3
152,548 - GFF4783 0.76 +0.4
152,907 + +0.1
152,908 - -0.5
152,908 - -0.5
152,923 - -0.1
152,923 - +0.6
153,033 + -1.0
153,034 - +0.9
153,069 + -0.0
153,069 + +0.1
153,069 + +0.1
153,069 + +0.1
153,070 - -1.6
153,070 - -0.3
153,070 - -0.3
153,084 + +0.5
153,085 - -0.3
153,144 + +0.7
153,213 + +0.2
153,307 + -0.3
153,307 + -0.9
153,307 + +0.7
153,410 + GFF4784 0.15 +1.1
153,468 + GFF4784 0.21 -0.8
153,468 + GFF4784 0.21 -0.4
153,468 + GFF4784 0.21 -0.0
153,469 - GFF4784 0.21 -0.4
153,469 - GFF4784 0.21 -0.6
153,469 - GFF4784 0.21 -0.0
153,485 + GFF4784 0.22 -0.3
153,581 + GFF4784 0.31 -1.2
153,581 + GFF4784 0.31 -0.2
153,581 + GFF4784 0.31 +0.3
153,581 + GFF4784 0.31 -0.2
153,582 - GFF4784 0.31 +0.6
153,582 - GFF4784 0.31 -0.2
153,655 + GFF4784 0.38 +0.3
153,665 + GFF4784 0.39 +0.3
153,666 - GFF4784 0.39 +1.6
153,674 + GFF4784 0.40 +0.1
153,674 + GFF4784 0.40 +0.1
153,674 + GFF4784 0.40 +0.4
153,674 + GFF4784 0.40 +0.2
153,674 + GFF4784 0.40 -0.2
153,674 + GFF4784 0.40 +0.7
153,674 + GFF4784 0.40 +0.3
153,674 + GFF4784 0.40 -0.5
153,674 + GFF4784 0.40 +0.1
153,674 + GFF4784 0.40 +1.1
153,674 + GFF4784 0.40 -1.0
153,674 + GFF4784 0.40 -0.4
153,674 + GFF4784 0.40 +0.7
153,674 + GFF4784 0.40 -0.7
153,674 + GFF4784 0.40 +0.1
153,674 + GFF4784 0.40 -0.1
153,674 + GFF4784 0.40 -1.7
153,674 + GFF4784 0.40 -0.8
153,674 + GFF4784 0.40 -0.5
153,675 - GFF4784 0.40 -0.0
153,675 - GFF4784 0.40 -1.6
153,675 - GFF4784 0.40 -0.0
153,675 - GFF4784 0.40 +0.1
153,675 - GFF4784 0.40 +0.4
153,675 - GFF4784 0.40 +0.4
153,675 - GFF4784 0.40 -1.1
153,675 - GFF4784 0.40 +0.3
153,675 - GFF4784 0.40 +0.6
153,675 - GFF4784 0.40 -0.4
153,675 - GFF4784 0.40 -0.3
153,675 - GFF4784 0.40 +0.6
153,675 - GFF4784 0.40 -1.3
153,675 - GFF4784 0.40 +0.3
153,675 - GFF4784 0.40 +0.5
153,675 - GFF4784 0.40 +1.0
153,675 - GFF4784 0.40 +0.3
153,675 - GFF4784 0.40 -0.0
153,675 - GFF4784 0.40 +0.2
153,679 + GFF4784 0.41 +0.3
153,681 + GFF4784 0.41 -0.1
153,682 - GFF4784 0.41 -0.1
153,682 - GFF4784 0.41 +0.3
153,682 - GFF4784 0.41 +0.1
153,682 - GFF4784 0.41 -0.7
153,682 - GFF4784 0.41 +0.1
153,722 - GFF4784 0.45 -0.8
153,722 - GFF4784 0.45 +0.1
153,722 - GFF4784 0.45 +0.0
153,803 + GFF4784 0.52 -0.6
153,804 - GFF4784 0.52 +0.5
153,997 + GFF4784 0.71 -0.0
154,010 + GFF4784 0.72 +2.1
154,010 + GFF4784 0.72 -1.1
154,010 + GFF4784 0.72 -0.6
154,010 + GFF4784 0.72 +0.8
154,010 + GFF4784 0.72 +0.1
154,010 + GFF4784 0.72 +0.4
154,011 - GFF4784 0.72 -0.3
154,064 + GFF4784 0.77 -0.1
154,064 + GFF4784 0.77 +1.5
154,064 + GFF4784 0.77 -1.5
154,065 - GFF4784 0.77 +0.2
154,144 + GFF4784 0.85 -0.6
154,145 - GFF4784 0.85 +0.6

Or see this region's nucleotide sequence