Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4155 and GFF4156 overlap by 14 nucleotides GFF4156 and GFF4157 overlap by 4 nucleotides GFF4157 and GFF4158 are separated by 10 nucleotides GFF4158 and GFF4159 overlap by 4 nucleotides
GFF4155 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 61,368 to 62,138
GFF4155
GFF4156 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 62,125 to 62,865
GFF4156
GFF4157 - hypothetical protein, at 62,862 to 63,812
GFF4157
GFF4158 - hypothetical protein, at 63,823 to 64,251
GFF4158
GFF4159 - no description, at 64,248 to 64,967
GFF4159
Position (kb) 62
63
64 Strain fitness (log2 ratio) -1
0
1 at 62.104 kb on - strand at 62.104 kb on - strand at 62.428 kb on + strand, within GFF4156 at 62.429 kb on - strand, within GFF4156 at 62.641 kb on + strand, within GFF4156 at 62.642 kb on - strand, within GFF4156 at 62.734 kb on + strand, within GFF4156 at 62.734 kb on + strand, within GFF4156 at 62.887 kb on - strand at 62.887 kb on - strand at 62.994 kb on + strand, within GFF4157 at 62.995 kb on - strand, within GFF4157 at 62.995 kb on - strand, within GFF4157 at 63.910 kb on + strand, within GFF4158 at 63.910 kb on + strand, within GFF4158 at 63.910 kb on + strand, within GFF4158 at 63.911 kb on - strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.561 kb on + strand, within GFF4159 at 64.562 kb on + strand, within GFF4159 at 64.563 kb on - strand, within GFF4159 at 64.563 kb on - strand, within GFF4159
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 62,104 - +0.1 62,104 - -0.0 62,428 + GFF4156 0.41 -0.2 62,429 - GFF4156 0.41 -0.8 62,641 + GFF4156 0.70 -0.8 62,642 - GFF4156 0.70 -1.3 62,734 + GFF4156 0.82 -0.5 62,734 + GFF4156 0.82 +1.6 62,887 - +0.1 62,887 - -0.6 62,994 + GFF4157 0.14 +0.3 62,995 - GFF4157 0.14 +0.1 62,995 - GFF4157 0.14 -0.2 63,910 + GFF4158 0.20 -0.2 63,910 + GFF4158 0.20 -0.8 63,910 + GFF4158 0.20 +0.0 63,911 - GFF4158 0.21 -0.2 64,057 + GFF4158 0.55 -0.0 64,057 + GFF4158 0.55 -0.3 64,057 + GFF4158 0.55 -0.4 64,058 - GFF4158 0.55 +0.2 64,058 - GFF4158 0.55 +0.1 64,058 - GFF4158 0.55 -0.2 64,058 - GFF4158 0.55 +0.6 64,058 - GFF4158 0.55 -0.2 64,058 - GFF4158 0.55 +0.9 64,561 + GFF4159 0.43 -0.1 64,562 + GFF4159 0.44 +0.6 64,563 - GFF4159 0.44 -0.2 64,563 - GFF4159 0.44 -0.0
Or see this region's nucleotide sequence