Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3979 and GFF3980 overlap by 4 nucleotides GFF3980 and GFF3981 are separated by 43 nucleotides
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
GFF3980 - 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-), at 183,844 to 184,308
GFF3980
GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515
GFF3981
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1 at 182.858 kb on + strand, within GFF3979 at 183.026 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.141 kb on - strand, within GFF3979 at 183.264 kb on + strand, within GFF3979 at 183.265 kb on - strand, within GFF3979 at 183.369 kb on - strand, within GFF3979 at 183.386 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.583 kb on - strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.941 kb on - strand, within GFF3980 at 184.156 kb on + strand, within GFF3980 at 184.347 kb on - strand at 184.526 kb on + strand, within GFF3981 at 184.527 kb on - strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.880 kb on + strand, within GFF3981 at 184.881 kb on - strand, within GFF3981 at 185.070 kb on - strand, within GFF3981 at 185.085 kb on - strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.198 kb on + strand, within GFF3981
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 182,858 + GFF3979 0.25 +0.9 183,026 + GFF3979 0.38 -0.2 183,140 + GFF3979 0.47 -1.4 183,140 + GFF3979 0.47 -0.2 183,141 - GFF3979 0.47 -0.3 183,264 + GFF3979 0.56 -0.1 183,265 - GFF3979 0.56 +0.1 183,369 - GFF3979 0.64 +0.4 183,386 + GFF3979 0.65 -0.3 183,435 + GFF3979 0.69 +0.4 183,435 + GFF3979 0.69 +0.6 183,583 - GFF3979 0.80 +0.3 183,714 + GFF3979 0.90 -0.0 183,714 + GFF3979 0.90 -0.1 183,941 - GFF3980 0.21 -2.1 184,156 + GFF3980 0.67 -1.1 184,347 - -0.5 184,526 + GFF3981 0.15 -0.7 184,527 - GFF3981 0.15 -0.4 184,844 + GFF3981 0.42 +0.3 184,844 + GFF3981 0.42 +0.5 184,880 + GFF3981 0.45 -0.2 184,881 - GFF3981 0.45 +0.6 185,070 - GFF3981 0.62 -0.1 185,085 - GFF3981 0.63 -0.0 185,198 + GFF3981 0.73 +0.3 185,198 + GFF3981 0.73 +0.2 185,198 + GFF3981 0.73 +1.0
Or see this region's nucleotide sequence