Strain Fitness in Variovorax sp. SCN45 around GFF3773

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3771 and GFF3772 overlap by 4 nucleotidesGFF3772 and GFF3773 are separated by 10 nucleotidesGFF3773 and GFF3774 overlap by 4 nucleotides GFF3771 - no description, at 262,941 to 263,495 GFF3771 GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412 GFF3772 GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403 GFF3773 GFF3774 - hypothetical protein, at 265,400 to 266,797 GFF3774 Position (kb) 264 265 266Strain fitness (log2 ratio) -2 -1 0 1at 263.445 kb on + strandat 263.445 kb on + strandat 263.446 kb on - strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.454 kb on + strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.455 kb on - strandat 263.493 kb on + strandat 263.655 kb on + strand, within GFF3772at 263.656 kb on - strand, within GFF3772at 264.380 kb on + strandat 264.658 kb on + strand, within GFF3773at 264.658 kb on + strand, within GFF3773at 264.658 kb on + strand, within GFF3773at 264.659 kb on - strand, within GFF3773at 264.836 kb on - strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.985 kb on + strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.986 kb on - strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.993 kb on + strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 264.994 kb on - strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.258 kb on + strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.259 kb on - strand, within GFF3773at 265.331 kb on - strandat 265.457 kb on - strandat 265.578 kb on + strand, within GFF3774at 265.579 kb on - strand, within GFF3774at 265.797 kb on + strand, within GFF3774at 266.354 kb on + strand, within GFF3774at 266.355 kb on - strand, within GFF3774at 266.355 kb on - strand, within GFF3774

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
263,445 + +1.0
263,445 + -1.1
263,446 - -2.1
263,454 + +0.5
263,454 + -0.3
263,454 + +0.7
263,454 + -0.8
263,454 + +0.5
263,454 + +0.5
263,454 + -0.3
263,455 - +1.3
263,455 - -0.5
263,455 - -0.3
263,455 - +0.3
263,493 + -0.1
263,655 + GFF3772 0.18 +0.1
263,656 - GFF3772 0.18 -0.0
264,380 + +0.0
264,658 + GFF3773 0.24 -0.1
264,658 + GFF3773 0.24 -0.9
264,658 + GFF3773 0.24 +0.5
264,659 - GFF3773 0.24 -0.2
264,836 - GFF3773 0.42 +0.7
264,985 + GFF3773 0.57 +0.1
264,985 + GFF3773 0.57 +1.4
264,985 + GFF3773 0.57 +0.4
264,985 + GFF3773 0.57 -0.2
264,986 - GFF3773 0.57 +1.7
264,986 - GFF3773 0.57 +1.0
264,986 - GFF3773 0.57 -0.1
264,993 + GFF3773 0.58 -0.7
264,993 + GFF3773 0.58 -1.1
264,993 + GFF3773 0.58 -0.5
264,994 - GFF3773 0.58 +0.9
264,994 - GFF3773 0.58 -0.1
264,994 - GFF3773 0.58 -2.7
264,994 - GFF3773 0.58 -0.1
264,994 - GFF3773 0.58 +0.1
265,258 + GFF3773 0.85 +0.7
265,258 + GFF3773 0.85 +0.4
265,258 + GFF3773 0.85 +0.0
265,258 + GFF3773 0.85 +0.1
265,258 + GFF3773 0.85 +0.9
265,258 + GFF3773 0.85 -0.1
265,259 - GFF3773 0.85 +0.6
265,259 - GFF3773 0.85 +0.4
265,259 - GFF3773 0.85 +0.3
265,259 - GFF3773 0.85 +1.7
265,331 - +1.0
265,457 - -2.7
265,578 + GFF3774 0.13 +0.2
265,579 - GFF3774 0.13 -0.4
265,797 + GFF3774 0.28 -0.9
266,354 + GFF3774 0.68 -0.3
266,355 - GFF3774 0.68 +0.4
266,355 - GFF3774 0.68 -0.9

Or see this region's nucleotide sequence