Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3756 and GFF3757 are separated by 96 nucleotides GFF3757 and GFF3758 are separated by 231 nucleotides GFF3758 and GFF3759 are separated by 34 nucleotides GFF3759 and GFF3760 are separated by 101 nucleotides
GFF3756 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 249,880 to 250,371
GFF3756
GFF3757 - hypothetical protein, at 250,468 to 250,890
GFF3757
GFF3758 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 251,122 to 252,396
GFF3758
GFF3759 - Uridine kinase family protein YggC homolog, at 252,431 to 253,084
GFF3759
GFF3760 - putative lipoprotein, at 253,186 to 253,875
GFF3760
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 250.410 kb on - strand at 250.411 kb on + strand at 250.412 kb on - strand at 250.412 kb on - strand at 250.418 kb on + strand at 250.418 kb on + strand at 250.418 kb on + strand at 250.418 kb on + strand at 250.418 kb on + strand at 250.419 kb on - strand at 250.419 kb on - strand at 250.419 kb on - strand at 250.419 kb on - strand at 250.454 kb on + strand at 250.454 kb on + strand at 250.455 kb on - strand at 250.526 kb on + strand, within GFF3757 at 250.526 kb on + strand, within GFF3757 at 250.526 kb on + strand, within GFF3757 at 250.526 kb on + strand, within GFF3757 at 250.548 kb on - strand, within GFF3757 at 250.691 kb on + strand, within GFF3757 at 250.691 kb on + strand, within GFF3757 at 250.691 kb on + strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.692 kb on - strand, within GFF3757 at 250.796 kb on + strand, within GFF3757 at 250.796 kb on + strand, within GFF3757 at 250.796 kb on + strand, within GFF3757 at 250.796 kb on + strand, within GFF3757 at 250.796 kb on + strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.797 kb on - strand, within GFF3757 at 250.894 kb on + strand at 250.894 kb on + strand at 250.894 kb on + strand at 250.894 kb on + strand at 250.941 kb on + strand at 250.941 kb on + strand at 250.941 kb on + strand at 250.942 kb on - strand at 250.942 kb on - strand at 250.942 kb on - strand at 250.970 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.992 kb on + strand at 250.993 kb on - strand at 250.993 kb on - strand at 250.993 kb on - strand at 250.993 kb on - strand at 250.993 kb on - strand at 250.993 kb on - strand at 250.993 kb on - strand at 250.993 kb on - strand at 251.055 kb on + strand at 251.055 kb on + strand at 251.055 kb on + strand at 251.055 kb on + strand at 251.056 kb on - strand at 251.056 kb on - strand at 251.056 kb on - strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.085 kb on + strand at 251.086 kb on - strand at 251.086 kb on - strand at 251.086 kb on - strand at 251.086 kb on - strand at 251.086 kb on - strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.206 kb on + strand at 251.206 kb on + strand at 251.206 kb on + strand at 251.207 kb on - strand at 251.207 kb on - strand at 251.449 kb on + strand, within GFF3758 at 251.450 kb on - strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.527 kb on + strand, within GFF3758 at 251.626 kb on + strand, within GFF3758 at 251.626 kb on + strand, within GFF3758 at 251.626 kb on + strand, within GFF3758 at 251.626 kb on + strand, within GFF3758 at 251.626 kb on + strand, within GFF3758 at 251.626 kb on + strand, within GFF3758 at 251.627 kb on - strand, within GFF3758 at 251.627 kb on - strand, within GFF3758 at 251.627 kb on - strand, within GFF3758 at 251.627 kb on - strand, within GFF3758 at 251.627 kb on - strand, within GFF3758 at 251.627 kb on - strand, within GFF3758 at 252.193 kb on + strand, within GFF3758 at 252.193 kb on + strand, within GFF3758 at 252.193 kb on + strand, within GFF3758 at 252.194 kb on - strand, within GFF3758 at 252.194 kb on - strand, within GFF3758 at 252.194 kb on - strand, within GFF3758 at 252.337 kb on + strand at 252.338 kb on - strand at 252.338 kb on - strand at 252.338 kb on - strand at 252.338 kb on - strand at 252.388 kb on + strand at 252.388 kb on + strand at 252.388 kb on + strand at 252.388 kb on + strand at 252.419 kb on + strand at 252.420 kb on - strand at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.707 kb on + strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.708 kb on - strand, within GFF3759 at 252.761 kb on + strand, within GFF3759 at 252.761 kb on + strand, within GFF3759 at 252.762 kb on - strand, within GFF3759 at 252.762 kb on - strand, within GFF3759 at 252.762 kb on - strand, within GFF3759 at 252.762 kb on - strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.854 kb on + strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.855 kb on - strand, within GFF3759 at 252.914 kb on + strand, within GFF3759 at 252.914 kb on + strand, within GFF3759 at 252.914 kb on + strand, within GFF3759 at 252.914 kb on + strand, within GFF3759 at 252.914 kb on + strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 252.915 kb on - strand, within GFF3759 at 253.170 kb on + strand at 253.170 kb on + strand at 253.171 kb on - strand at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.349 kb on - strand, within GFF3760
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 250,410 - -1.1 250,411 + -0.4 250,412 - +0.8 250,412 - -0.7 250,418 + -0.6 250,418 + -0.5 250,418 + -0.1 250,418 + -0.7 250,418 + -0.3 250,419 - -0.1 250,419 - -0.5 250,419 - +0.5 250,419 - -0.3 250,454 + -0.9 250,454 + -0.4 250,455 - -0.3 250,526 + GFF3757 0.14 +0.2 250,526 + GFF3757 0.14 +0.1 250,526 + GFF3757 0.14 +1.1 250,526 + GFF3757 0.14 -0.3 250,548 - GFF3757 0.19 -0.1 250,691 + GFF3757 0.53 +1.3 250,691 + GFF3757 0.53 +0.7 250,691 + GFF3757 0.53 -0.1 250,692 - GFF3757 0.53 +0.0 250,692 - GFF3757 0.53 -0.6 250,692 - GFF3757 0.53 -0.9 250,692 - GFF3757 0.53 +1.1 250,692 - GFF3757 0.53 +0.7 250,692 - GFF3757 0.53 +0.1 250,692 - GFF3757 0.53 +0.0 250,692 - GFF3757 0.53 +1.9 250,692 - GFF3757 0.53 -0.5 250,796 + GFF3757 0.78 -0.2 250,796 + GFF3757 0.78 +0.7 250,796 + GFF3757 0.78 -0.2 250,796 + GFF3757 0.78 -1.0 250,796 + GFF3757 0.78 -0.1 250,797 - GFF3757 0.78 +0.4 250,797 - GFF3757 0.78 -0.8 250,797 - GFF3757 0.78 -0.4 250,797 - GFF3757 0.78 -0.9 250,797 - GFF3757 0.78 +0.1 250,797 - GFF3757 0.78 +0.2 250,797 - GFF3757 0.78 -0.4 250,894 + -0.1 250,894 + +0.8 250,894 + +0.1 250,894 + -1.6 250,941 + -0.1 250,941 + -0.4 250,941 + -0.3 250,942 - +2.7 250,942 - -0.1 250,942 - +0.6 250,970 + +0.1 250,992 + -0.1 250,992 + -2.7 250,992 + -0.1 250,992 + -0.4 250,992 + +0.9 250,992 + +1.3 250,992 + +0.8 250,992 + -0.2 250,992 + +0.2 250,992 + +1.3 250,992 + -0.0 250,992 + -0.9 250,992 + +0.1 250,992 + +0.7 250,992 + +0.1 250,992 + -0.2 250,993 - -0.3 250,993 - +1.0 250,993 - +0.6 250,993 - +0.1 250,993 - -0.8 250,993 - -0.2 250,993 - -0.4 250,993 - +0.1 251,055 + -0.7 251,055 + -0.3 251,055 + -0.1 251,055 + -0.7 251,056 - -0.8 251,056 - -0.7 251,056 - -0.2 251,085 + -0.2 251,085 + -0.6 251,085 + -0.1 251,085 + -1.3 251,085 + -0.0 251,085 + -0.9 251,085 + -0.2 251,085 + -0.2 251,086 - -0.2 251,086 - -0.3 251,086 - -0.2 251,086 - +0.0 251,086 - +0.4 251,176 + +1.7 251,176 + -1.2 251,176 + +0.3 251,176 + -0.9 251,176 + +0.7 251,176 + -1.1 251,176 + +0.1 251,176 + -1.8 251,176 + -0.0 251,177 - +1.3 251,177 - -0.2 251,177 - -0.8 251,177 - -1.3 251,177 - -0.7 251,177 - +0.4 251,177 - -1.6 251,177 - +1.1 251,177 - +0.2 251,177 - +0.0 251,177 - -1.3 251,177 - +0.3 251,206 + -0.7 251,206 + -0.1 251,206 + -0.4 251,207 - -0.3 251,207 - -0.7 251,449 + GFF3758 0.26 -0.5 251,450 - GFF3758 0.26 +0.7 251,527 + GFF3758 0.32 -0.9 251,527 + GFF3758 0.32 -0.3 251,527 + GFF3758 0.32 -1.0 251,527 + GFF3758 0.32 -0.3 251,527 + GFF3758 0.32 -0.4 251,527 + GFF3758 0.32 -0.2 251,527 + GFF3758 0.32 +0.5 251,527 + GFF3758 0.32 -1.1 251,626 + GFF3758 0.40 +0.9 251,626 + GFF3758 0.40 -2.1 251,626 + GFF3758 0.40 +0.3 251,626 + GFF3758 0.40 -0.3 251,626 + GFF3758 0.40 -0.1 251,626 + GFF3758 0.40 +0.1 251,627 - GFF3758 0.40 -1.0 251,627 - GFF3758 0.40 -0.3 251,627 - GFF3758 0.40 -1.7 251,627 - GFF3758 0.40 +0.2 251,627 - GFF3758 0.40 -2.0 251,627 - GFF3758 0.40 -1.7 252,193 + GFF3758 0.84 -0.2 252,193 + GFF3758 0.84 -0.1 252,193 + GFF3758 0.84 +0.1 252,194 - GFF3758 0.84 -0.7 252,194 - GFF3758 0.84 -0.9 252,194 - GFF3758 0.84 -0.7 252,337 + -0.9 252,338 - -0.8 252,338 - -0.5 252,338 - -1.3 252,338 - +0.3 252,388 + -3.0 252,388 + -1.3 252,388 + +0.3 252,388 + -1.5 252,419 + +0.3 252,420 - -0.1 252,707 + GFF3759 0.42 -0.1 252,707 + GFF3759 0.42 +0.7 252,707 + GFF3759 0.42 +0.7 252,707 + GFF3759 0.42 -0.3 252,707 + GFF3759 0.42 -0.5 252,707 + GFF3759 0.42 -0.5 252,707 + GFF3759 0.42 -0.8 252,707 + GFF3759 0.42 -0.7 252,707 + GFF3759 0.42 +0.4 252,707 + GFF3759 0.42 +0.2 252,707 + GFF3759 0.42 -0.1 252,707 + GFF3759 0.42 +0.2 252,707 + GFF3759 0.42 -0.3 252,708 - GFF3759 0.42 -0.3 252,708 - GFF3759 0.42 -0.6 252,708 - GFF3759 0.42 +0.0 252,708 - GFF3759 0.42 -1.0 252,708 - GFF3759 0.42 -0.7 252,708 - GFF3759 0.42 +0.4 252,708 - GFF3759 0.42 +0.3 252,761 + GFF3759 0.50 -0.3 252,761 + GFF3759 0.50 +0.3 252,762 - GFF3759 0.51 -0.2 252,762 - GFF3759 0.51 +0.5 252,762 - GFF3759 0.51 -0.8 252,762 - GFF3759 0.51 +1.3 252,854 + GFF3759 0.65 +0.2 252,854 + GFF3759 0.65 +0.1 252,854 + GFF3759 0.65 +0.3 252,854 + GFF3759 0.65 -0.1 252,854 + GFF3759 0.65 +0.3 252,854 + GFF3759 0.65 -0.5 252,854 + GFF3759 0.65 -0.2 252,854 + GFF3759 0.65 -1.0 252,854 + GFF3759 0.65 +0.3 252,854 + GFF3759 0.65 -0.1 252,854 + GFF3759 0.65 -0.1 252,854 + GFF3759 0.65 +0.7 252,854 + GFF3759 0.65 -1.2 252,855 - GFF3759 0.65 -1.2 252,855 - GFF3759 0.65 -0.3 252,855 - GFF3759 0.65 -0.8 252,855 - GFF3759 0.65 -1.5 252,855 - GFF3759 0.65 -0.3 252,855 - GFF3759 0.65 -0.8 252,855 - GFF3759 0.65 -0.7 252,855 - GFF3759 0.65 -0.9 252,855 - GFF3759 0.65 -0.3 252,855 - GFF3759 0.65 -0.1 252,855 - GFF3759 0.65 +0.1 252,855 - GFF3759 0.65 -0.1 252,855 - GFF3759 0.65 +0.1 252,855 - GFF3759 0.65 +0.5 252,855 - GFF3759 0.65 -0.1 252,855 - GFF3759 0.65 -0.7 252,914 + GFF3759 0.74 -0.5 252,914 + GFF3759 0.74 +1.3 252,914 + GFF3759 0.74 -0.4 252,914 + GFF3759 0.74 +0.9 252,914 + GFF3759 0.74 +0.1 252,915 - GFF3759 0.74 +0.1 252,915 - GFF3759 0.74 +0.9 252,915 - GFF3759 0.74 +0.1 252,915 - GFF3759 0.74 +0.7 252,915 - GFF3759 0.74 -0.8 252,915 - GFF3759 0.74 -0.2 252,915 - GFF3759 0.74 +1.7 252,915 - GFF3759 0.74 -1.0 253,170 + +0.4 253,170 + +0.6 253,171 - -0.3 253,303 + GFF3760 0.17 -0.6 253,303 + GFF3760 0.17 -0.1 253,303 + GFF3760 0.17 -0.4 253,303 + GFF3760 0.17 +0.4 253,303 + GFF3760 0.17 -0.3 253,303 + GFF3760 0.17 -1.5 253,303 + GFF3760 0.17 -0.6 253,304 - GFF3760 0.17 -0.6 253,304 - GFF3760 0.17 -0.8 253,304 - GFF3760 0.17 -0.0 253,304 - GFF3760 0.17 +0.2 253,304 - GFF3760 0.17 -0.1 253,348 + GFF3760 0.23 -0.1 253,348 + GFF3760 0.23 -0.8 253,348 + GFF3760 0.23 -0.2 253,348 + GFF3760 0.23 -0.5 253,349 - GFF3760 0.24 -0.4
Or see this region's nucleotide sequence