Strain Fitness in Variovorax sp. SCN45 around GFF3726

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3725 and GFF3726 are separated by 18 nucleotidesGFF3726 and GFF3727 are separated by 206 nucleotides GFF3725 - RND efflux system, inner membrane transporter, at 221,865 to 225,029 GFF3725 GFF3726 - RND efflux system, membrane fusion protein, at 225,048 to 226,313 GFF3726 GFF3727 - Transcriptional regulator, AcrR family, at 226,520 to 227,161 GFF3727 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 224.083 kb on + strand, within GFF3725at 224.083 kb on + strand, within GFF3725at 224.206 kb on + strand, within GFF3725at 224.206 kb on + strand, within GFF3725at 224.207 kb on - strand, within GFF3725at 224.207 kb on - strand, within GFF3725at 224.443 kb on + strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.560 kb on + strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.800 kb on + strandat 224.800 kb on + strandat 224.800 kb on + strandat 224.800 kb on + strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.926 kb on + strandat 224.927 kb on - strandat 225.049 kb on + strandat 225.049 kb on + strandat 225.049 kb on + strandat 225.050 kb on - strandat 225.050 kb on - strandat 225.050 kb on - strandat 225.400 kb on + strand, within GFF3726at 225.400 kb on + strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.514 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.578 kb on - strand, within GFF3726at 225.578 kb on - strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.763 kb on + strand, within GFF3726at 225.763 kb on + strand, within GFF3726at 225.853 kb on + strand, within GFF3726at 225.895 kb on + strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 226.372 kb on + strandat 226.403 kb on + strandat 226.408 kb on + strandat 226.409 kb on - strandat 226.409 kb on - strandat 226.412 kb on + strandat 226.413 kb on - strandat 226.427 kb on - strandat 226.427 kb on - strandat 226.427 kb on - strandat 226.427 kb on - strandat 226.476 kb on - strandat 226.476 kb on - strandat 226.476 kb on - strandat 226.504 kb on + strandat 226.504 kb on + strandat 226.504 kb on + strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.758 kb on + strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.848 kb on - strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.085 kb on - strand, within GFF3727at 227.085 kb on - strand, within GFF3727at 227.162 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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224,083 + GFF3725 0.70 -0.1
224,083 + GFF3725 0.70 +0.4
224,206 + GFF3725 0.74 -0.7
224,206 + GFF3725 0.74 +0.0
224,207 - GFF3725 0.74 +0.3
224,207 - GFF3725 0.74 +0.3
224,443 + GFF3725 0.81 -0.0
224,444 - GFF3725 0.81 -0.3
224,444 - GFF3725 0.81 +0.5
224,444 - GFF3725 0.81 -0.9
224,444 - GFF3725 0.81 -0.5
224,444 - GFF3725 0.81 -0.3
224,560 + GFF3725 0.85 -0.8
224,561 - GFF3725 0.85 +0.3
224,561 - GFF3725 0.85 +0.5
224,561 - GFF3725 0.85 +0.0
224,561 - GFF3725 0.85 -0.6
224,800 + -0.4
224,800 + +1.7
224,800 + -0.3
224,800 + -0.5
224,801 - -0.9
224,801 - -0.5
224,801 - -2.0
224,801 - -0.1
224,801 - -0.3
224,926 + +0.3
224,927 - +1.1
225,049 + -0.1
225,049 + +0.5
225,049 + +0.1
225,050 - -0.6
225,050 - +0.0
225,050 - -0.4
225,400 + GFF3726 0.28 +0.5
225,400 + GFF3726 0.28 -0.8
225,401 - GFF3726 0.28 -0.9
225,401 - GFF3726 0.28 +0.1
225,401 - GFF3726 0.28 -0.7
225,401 - GFF3726 0.28 -0.1
225,401 - GFF3726 0.28 -0.1
225,401 - GFF3726 0.28 -0.7
225,401 - GFF3726 0.28 -0.2
225,514 + GFF3726 0.37 -0.9
225,577 + GFF3726 0.42 -0.6
225,577 + GFF3726 0.42 -0.3
225,577 + GFF3726 0.42 -0.5
225,578 - GFF3726 0.42 +0.2
225,578 - GFF3726 0.42 -0.6
225,643 + GFF3726 0.47 +1.1
225,643 + GFF3726 0.47 -0.7
225,643 + GFF3726 0.47 +0.3
225,643 + GFF3726 0.47 +0.3
225,644 - GFF3726 0.47 -1.1
225,644 - GFF3726 0.47 -0.1
225,644 - GFF3726 0.47 -1.8
225,644 - GFF3726 0.47 +1.1
225,644 - GFF3726 0.47 -0.2
225,644 - GFF3726 0.47 -1.5
225,644 - GFF3726 0.47 -0.7
225,644 - GFF3726 0.47 -0.8
225,763 + GFF3726 0.56 -0.7
225,763 + GFF3726 0.56 -0.6
225,853 + GFF3726 0.64 -1.2
225,895 + GFF3726 0.67 -0.5
225,896 - GFF3726 0.67 +0.5
225,896 - GFF3726 0.67 -0.2
225,896 - GFF3726 0.67 +0.0
225,896 - GFF3726 0.67 -0.4
226,372 + -0.8
226,403 + -0.4
226,408 + +0.4
226,409 - -0.7
226,409 - -0.9
226,412 + -0.6
226,413 - -1.0
226,427 - -1.1
226,427 - +0.2
226,427 - -0.9
226,427 - +2.3
226,476 - -0.6
226,476 - -0.3
226,476 - -0.7
226,504 + -0.3
226,504 + +0.9
226,504 + +0.0
226,505 - -1.2
226,505 - -0.3
226,505 - -0.7
226,505 - +0.6
226,505 - -0.9
226,505 - -0.4
226,637 + GFF3727 0.18 +0.6
226,637 + GFF3727 0.18 +0.1
226,637 + GFF3727 0.18 +0.9
226,637 + GFF3727 0.18 +0.8
226,637 + GFF3727 0.18 +0.3
226,637 + GFF3727 0.18 -0.7
226,638 - GFF3727 0.18 -0.1
226,638 - GFF3727 0.18 +0.4
226,638 - GFF3727 0.18 +0.1
226,638 - GFF3727 0.18 -0.8
226,758 + GFF3727 0.37 -2.0
226,759 - GFF3727 0.37 +0.1
226,759 - GFF3727 0.37 -1.3
226,759 - GFF3727 0.37 -0.5
226,759 - GFF3727 0.37 -0.7
226,847 + GFF3727 0.51 -2.0
226,847 + GFF3727 0.51 -0.2
226,847 + GFF3727 0.51 -1.0
226,848 - GFF3727 0.51 -0.1
227,084 + GFF3727 0.88 -1.3
227,084 + GFF3727 0.88 -0.7
227,084 + GFF3727 0.88 -0.9
227,084 + GFF3727 0.88 -0.7
227,084 + GFF3727 0.88 +0.2
227,084 + GFF3727 0.88 -0.1
227,085 - GFF3727 0.88 -1.7
227,085 - GFF3727 0.88 -0.3
227,162 + -0.5
227,280 + +0.4
227,280 + -0.2
227,280 + -0.2
227,280 + -0.9
227,280 + -0.6
227,280 + +0.7
227,280 + -0.4
227,280 + +0.4
227,280 + -0.8
227,280 + +0.9
227,280 + -0.6
227,280 + -0.6
227,281 - -0.9
227,281 - -0.9
227,281 - +0.2
227,281 - +0.1
227,281 - -0.6
227,281 - +0.2
227,281 - +0.3
227,281 - +0.3
227,281 - +0.9
227,281 - -1.8
227,281 - -0.5
227,281 - +0.7
227,281 - -0.2
227,281 - -0.3
227,281 - +0.6
227,281 - +0.3

Or see this region's nucleotide sequence