Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3674 and GFF3675 are separated by 7 nucleotides GFF3675 and GFF3676 overlap by 4 nucleotides GFF3676 and GFF3677 overlap by 4 nucleotides GFF3677 and GFF3678 overlap by 4 nucleotides
GFF3674 - Lipoyl synthase (EC 2.8.1.8), at 175,678 to 176,679
GFF3674
GFF3675 - Octanoate-[acyl-carrier-protein]-protein-N-octano yltransferase (EC 2.3.1.181), at 176,687 to 177,415
GFF3675
GFF3676 - Outer membrane protein romA, at 177,412 to 178,608
GFF3676
GFF3677 - Proposed lipoate regulatory protein YbeD, at 178,605 to 178,913
GFF3677
GFF3678 - D-alanine aminotransferase (EC 2.6.1.21), at 178,910 to 179,803
GFF3678
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2
3 at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 177.662 kb on + strand, within GFF3676 at 177.662 kb on + strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.761 kb on + strand, within GFF3676 at 177.761 kb on + strand, within GFF3676 at 177.779 kb on + strand, within GFF3676 at 177.779 kb on + strand, within GFF3676 at 177.779 kb on + strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.830 kb on + strand, within GFF3676 at 178.118 kb on + strand, within GFF3676 at 178.118 kb on + strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.150 kb on - strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.529 kb on + strand at 178.529 kb on + strand at 178.705 kb on + strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.959 kb on + strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.009 kb on - strand, within GFF3678 at 179.043 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 176,683 + -0.0 176,683 + -0.7 176,683 + +0.1 176,683 + -0.1 176,683 + +0.4 176,683 + +1.4 176,684 - -0.5 176,684 - +0.2 176,684 - +0.5 176,684 - +1.1 176,684 - -0.7 176,684 - +0.1 176,684 - +0.1 176,684 - +0.3 176,684 - +0.9 176,684 - +0.7 176,684 - -1.2 176,684 - +1.7 176,684 - +0.8 177,662 + GFF3676 0.21 -0.6 177,662 + GFF3676 0.21 +0.2 177,663 - GFF3676 0.21 -0.0 177,663 - GFF3676 0.21 +0.7 177,663 - GFF3676 0.21 -0.5 177,663 - GFF3676 0.21 -0.9 177,761 + GFF3676 0.29 +0.7 177,761 + GFF3676 0.29 +1.3 177,779 + GFF3676 0.31 -0.3 177,779 + GFF3676 0.31 +0.4 177,779 + GFF3676 0.31 -1.1 177,780 - GFF3676 0.31 +1.4 177,780 - GFF3676 0.31 -1.6 177,780 - GFF3676 0.31 -0.4 177,780 - GFF3676 0.31 -0.2 177,780 - GFF3676 0.31 -0.1 177,830 + GFF3676 0.35 -0.9 178,118 + GFF3676 0.59 -0.0 178,118 + GFF3676 0.59 -0.1 178,119 - GFF3676 0.59 +0.0 178,119 - GFF3676 0.59 -0.8 178,119 - GFF3676 0.59 -0.2 178,119 - GFF3676 0.59 -0.3 178,150 - GFF3676 0.62 +2.7 178,478 + GFF3676 0.89 -0.2 178,478 + GFF3676 0.89 -0.2 178,478 + GFF3676 0.89 -0.5 178,478 + GFF3676 0.89 -0.6 178,478 + GFF3676 0.89 +1.3 178,478 + GFF3676 0.89 -0.0 178,478 + GFF3676 0.89 +3.7 178,478 + GFF3676 0.89 -1.7 178,478 + GFF3676 0.89 +0.1 178,478 + GFF3676 0.89 -0.4 178,478 + GFF3676 0.89 +0.5 178,478 + GFF3676 0.89 +0.0 178,478 + GFF3676 0.89 -0.5 178,478 + GFF3676 0.89 -0.4 178,478 + GFF3676 0.89 +0.2 178,478 + GFF3676 0.89 -1.1 178,478 + GFF3676 0.89 +0.4 178,478 + GFF3676 0.89 -0.2 178,478 + GFF3676 0.89 +0.2 178,479 - GFF3676 0.89 -0.7 178,479 - GFF3676 0.89 +0.7 178,479 - GFF3676 0.89 -0.8 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 -0.8 178,479 - GFF3676 0.89 +0.1 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 -1.2 178,479 - GFF3676 0.89 +0.1 178,479 - GFF3676 0.89 -0.7 178,479 - GFF3676 0.89 +0.2 178,479 - GFF3676 0.89 -0.9 178,479 - GFF3676 0.89 +2.7 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 +0.3 178,479 - GFF3676 0.89 +0.0 178,479 - GFF3676 0.89 -0.2 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 -0.8 178,479 - GFF3676 0.89 -1.5 178,479 - GFF3676 0.89 -0.2 178,479 - GFF3676 0.89 -1.1 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 -1.4 178,479 - GFF3676 0.89 -0.7 178,479 - GFF3676 0.89 -0.4 178,526 + +0.5 178,526 + +0.3 178,526 + +0.1 178,526 + -0.5 178,526 + -1.3 178,526 + -0.7 178,526 + -0.7 178,527 - -0.6 178,527 - -0.3 178,527 - -0.0 178,527 - -0.4 178,527 - -0.5 178,527 - +0.2 178,527 - -0.5 178,527 - -0.5 178,527 - +0.5 178,527 - +0.1 178,529 + +0.8 178,529 + -0.1 178,705 + GFF3677 0.32 -1.5 178,706 - GFF3677 0.33 -1.7 178,706 - GFF3677 0.33 -1.1 178,943 + -0.1 178,943 + +0.7 178,943 + -0.4 178,943 + -0.2 178,943 + -0.6 178,943 + +0.2 178,943 + -0.7 178,944 - +0.1 178,944 - +0.0 178,944 - -1.0 178,944 - -0.8 178,944 - +0.3 178,944 - -1.6 178,959 + -1.0 178,960 - +0.4 178,960 - -1.5 178,960 - +0.6 178,968 + -1.0 178,968 + +1.7 178,968 + -0.4 178,968 + -0.1 178,968 + -0.4 178,969 - +0.4 178,969 - -0.7 178,969 - -0.3 178,980 + -0.8 178,980 + +0.7 178,980 + +0.3 178,980 + -0.3 178,980 + +0.6 178,980 + -0.1 178,980 + -0.5 178,980 + +0.9 178,980 + -0.6 178,980 + -1.3 178,980 + -0.6 178,980 + -0.4 178,980 + +0.1 178,980 + -0.7 178,980 + -0.3 178,980 + -0.3 178,980 + -1.0 178,981 - -0.3 178,981 - -0.1 178,981 - -0.1 178,981 - +0.7 178,981 - +1.1 178,981 - +0.5 178,981 - -0.7 178,981 - -1.3 179,008 + GFF3678 0.11 -0.1 179,008 + GFF3678 0.11 -0.2 179,008 + GFF3678 0.11 -0.6 179,009 - GFF3678 0.11 +0.3 179,043 + GFF3678 0.15 +0.2 179,511 + GFF3678 0.67 -0.4 179,511 + GFF3678 0.67 -0.4 179,511 + GFF3678 0.67 +0.7 179,512 - GFF3678 0.67 -1.3 179,512 - GFF3678 0.67 -1.5 179,512 - GFF3678 0.67 -0.3
Or see this region's nucleotide sequence