Strain Fitness in Variovorax sp. SCN45 around GFF3529

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3528 and GFF3529 are separated by 64 nucleotidesGFF3529 and GFF3530 are separated by 83 nucleotidesGFF3530 and GFF3531 overlap by 34 nucleotides GFF3528 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 33,824 to 35,269 GFF3528 GFF3529 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 35,334 to 36,413 GFF3529 GFF3530 - Pseudouridine synthase, at 36,497 to 37,330 GFF3530 GFF3531 - hypothetical protein, at 37,297 to 38,418 GFF3531 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.515 kb on + strand, within GFF3528at 34.516 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.605 kb on + strand, within GFF3528at 35.086 kb on - strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.098 kb on - strand, within GFF3528at 35.098 kb on - strand, within GFF3528at 35.098 kb on - strand, within GFF3528at 35.154 kb on + strandat 35.154 kb on + strandat 35.154 kb on + strandat 35.154 kb on + strandat 35.154 kb on + strandat 35.155 kb on - strandat 35.155 kb on - strandat 35.155 kb on - strandat 35.155 kb on - strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.161 kb on - strandat 35.161 kb on - strandat 35.161 kb on - strandat 35.161 kb on - strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.389 kb on + strandat 35.389 kb on + strandat 35.389 kb on + strandat 35.390 kb on - strandat 35.390 kb on - strandat 35.770 kb on + strand, within GFF3529at 35.770 kb on + strand, within GFF3529at 35.770 kb on + strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.797 kb on + strand, within GFF3529at 35.803 kb on + strand, within GFF3529at 35.803 kb on + strand, within GFF3529at 35.804 kb on - strand, within GFF3529at 35.804 kb on - strand, within GFF3529at 35.815 kb on + strand, within GFF3529at 35.816 kb on - strand, within GFF3529at 35.854 kb on + strand, within GFF3529at 35.855 kb on - strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.948 kb on - strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.029 kb on - strand, within GFF3529at 36.029 kb on - strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.155 kb on - strand, within GFF3529at 36.382 kb on + strandat 36.382 kb on + strandat 36.383 kb on - strandat 36.383 kb on - strandat 36.383 kb on - strandat 36.388 kb on + strandat 36.388 kb on + strandat 36.389 kb on - strandat 36.389 kb on - strandat 36.464 kb on - strandat 36.965 kb on + strand, within GFF3530at 36.965 kb on + strand, within GFF3530at 36.965 kb on + strand, within GFF3530at 36.966 kb on - strand, within GFF3530at 36.966 kb on - strand, within GFF3530at 36.983 kb on + strand, within GFF3530at 36.983 kb on + strand, within GFF3530at 36.984 kb on - strand, within GFF3530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
34,452 + GFF3528 0.43 -0.8
34,452 + GFF3528 0.43 -0.8
34,452 + GFF3528 0.43 -0.7
34,452 + GFF3528 0.43 +0.8
34,452 + GFF3528 0.43 -0.3
34,452 + GFF3528 0.43 +0.2
34,452 + GFF3528 0.43 +0.3
34,452 + GFF3528 0.43 -0.3
34,453 - GFF3528 0.43 +0.2
34,453 - GFF3528 0.43 -0.6
34,453 - GFF3528 0.43 -0.2
34,453 - GFF3528 0.43 -0.9
34,453 - GFF3528 0.43 +0.1
34,453 - GFF3528 0.43 -0.4
34,453 - GFF3528 0.43 -0.1
34,515 + GFF3528 0.48 +0.4
34,516 - GFF3528 0.48 +1.1
34,603 - GFF3528 0.54 -0.2
34,603 - GFF3528 0.54 -0.7
34,603 - GFF3528 0.54 -0.8
34,603 - GFF3528 0.54 +0.5
34,605 + GFF3528 0.54 -1.1
35,086 - GFF3528 0.87 +0.0
35,097 + GFF3528 0.88 -0.7
35,097 + GFF3528 0.88 -0.7
35,097 + GFF3528 0.88 -0.4
35,097 + GFF3528 0.88 -0.5
35,098 - GFF3528 0.88 -1.1
35,098 - GFF3528 0.88 -1.4
35,098 - GFF3528 0.88 -0.9
35,154 + -0.3
35,154 + +0.5
35,154 + +0.4
35,154 + -0.2
35,154 + +0.2
35,155 - -0.5
35,155 - -0.1
35,155 - -0.7
35,155 - -0.6
35,160 + -0.0
35,160 + -1.7
35,160 + +0.3
35,160 + -2.0
35,160 + +0.3
35,161 - -0.5
35,161 - +0.8
35,161 - -0.6
35,161 - -0.7
35,208 + -0.0
35,208 + +0.1
35,208 + +0.0
35,208 + -0.4
35,208 + -0.2
35,209 - -0.2
35,209 - -0.7
35,209 - +0.9
35,209 - -0.9
35,209 - +1.7
35,389 + -1.8
35,389 + -0.0
35,389 + -1.0
35,390 - -0.9
35,390 - -0.3
35,770 + GFF3529 0.40 -2.0
35,770 + GFF3529 0.40 -1.0
35,770 + GFF3529 0.40 -0.7
35,771 - GFF3529 0.40 -0.8
35,771 - GFF3529 0.40 -0.4
35,771 - GFF3529 0.40 -1.1
35,771 - GFF3529 0.40 -1.6
35,771 - GFF3529 0.40 -1.8
35,797 + GFF3529 0.43 +0.7
35,803 + GFF3529 0.43 -1.3
35,803 + GFF3529 0.43 -0.4
35,804 - GFF3529 0.44 -1.2
35,804 - GFF3529 0.44 -0.9
35,815 + GFF3529 0.45 -0.6
35,816 - GFF3529 0.45 -0.8
35,854 + GFF3529 0.48 -0.5
35,855 - GFF3529 0.48 +1.1
35,947 + GFF3529 0.57 -0.7
35,947 + GFF3529 0.57 -0.9
35,947 + GFF3529 0.57 +1.1
35,947 + GFF3529 0.57 -0.5
35,948 - GFF3529 0.57 -0.7
36,028 + GFF3529 0.64 +0.1
36,028 + GFF3529 0.64 -0.2
36,028 + GFF3529 0.64 -1.6
36,029 - GFF3529 0.64 -0.2
36,029 - GFF3529 0.64 +0.0
36,031 + GFF3529 0.65 -0.9
36,031 + GFF3529 0.65 -1.2
36,031 + GFF3529 0.65 -0.9
36,031 + GFF3529 0.65 -0.3
36,032 - GFF3529 0.65 -1.3
36,032 - GFF3529 0.65 -0.9
36,032 - GFF3529 0.65 -1.3
36,032 - GFF3529 0.65 -0.6
36,032 - GFF3529 0.65 -0.3
36,154 + GFF3529 0.76 +1.0
36,154 + GFF3529 0.76 -1.2
36,154 + GFF3529 0.76 -0.4
36,155 - GFF3529 0.76 -1.1
36,382 + +0.5
36,382 + +0.1
36,383 - -0.1
36,383 - -0.4
36,383 - -0.4
36,388 + +0.4
36,388 + +0.2
36,389 - -0.0
36,389 - +0.5
36,464 - +0.5
36,965 + GFF3530 0.56 -0.0
36,965 + GFF3530 0.56 -0.5
36,965 + GFF3530 0.56 -0.4
36,966 - GFF3530 0.56 -1.5
36,966 - GFF3530 0.56 +0.8
36,983 + GFF3530 0.58 -0.4
36,983 + GFF3530 0.58 -0.6
36,984 - GFF3530 0.58 -0.5

Or see this region's nucleotide sequence