Strain Fitness in Variovorax sp. SCN45 around GFF336

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF335 and GFF336 are separated by 14 nucleotidesGFF336 and GFF337 overlap by 48 nucleotidesGFF337 and GFF338 are separated by 12 nucleotides GFF335 - Cytosine deaminase (EC 3.5.4.1), at 368,475 to 369,755 GFF335 GFF336 - no description, at 369,770 to 370,615 GFF336 GFF337 - hypothetical protein, at 370,568 to 371,173 GFF337 GFF338 - Chloramphenicol acetyltransferase (EC 2.3.1.28), at 371,186 to 371,932 GFF338 Position (kb) 369 370 371Strain fitness (log2 ratio) -1 0 1at 368.781 kb on + strand, within GFF335at 368.782 kb on - strand, within GFF335at 368.782 kb on - strand, within GFF335at 368.782 kb on - strand, within GFF335at 368.898 kb on + strand, within GFF335at 368.898 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.228 kb on + strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.229 kb on - strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.231 kb on + strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.232 kb on - strand, within GFF335at 369.327 kb on + strand, within GFF335at 369.327 kb on + strand, within GFF335at 369.328 kb on - strand, within GFF335at 369.328 kb on - strand, within GFF335at 369.328 kb on - strand, within GFF335at 369.870 kb on - strand, within GFF336at 369.870 kb on - strand, within GFF336at 369.902 kb on + strand, within GFF336at 369.902 kb on + strand, within GFF336at 369.902 kb on + strand, within GFF336at 369.902 kb on + strand, within GFF336at 369.902 kb on + strand, within GFF336at 369.903 kb on - strand, within GFF336at 369.903 kb on - strand, within GFF336at 369.903 kb on - strand, within GFF336at 369.903 kb on - strand, within GFF336at 369.965 kb on + strand, within GFF336at 370.053 kb on - strand, within GFF336at 370.325 kb on + strand, within GFF336at 370.325 kb on + strand, within GFF336at 370.325 kb on + strand, within GFF336at 370.325 kb on + strand, within GFF336at 370.325 kb on + strand, within GFF336at 370.325 kb on + strand, within GFF336at 370.326 kb on - strand, within GFF336at 370.326 kb on - strand, within GFF336at 370.326 kb on - strand, within GFF336at 370.326 kb on - strand, within GFF336at 370.326 kb on - strand, within GFF336at 370.562 kb on + strandat 370.562 kb on + strandat 370.562 kb on + strandat 370.562 kb on + strandat 370.562 kb on + strandat 370.562 kb on + strandat 370.562 kb on + strandat 370.562 kb on + strandat 370.563 kb on - strandat 370.563 kb on - strandat 370.563 kb on - strandat 370.563 kb on - strandat 370.563 kb on - strandat 370.563 kb on - strandat 370.722 kb on + strand, within GFF337at 370.722 kb on + strand, within GFF337at 370.723 kb on - strand, within GFF337at 370.723 kb on - strand, within GFF337at 370.723 kb on - strand, within GFF337at 370.959 kb on + strand, within GFF337at 370.959 kb on + strand, within GFF337at 370.959 kb on + strand, within GFF337at 370.960 kb on - strand, within GFF337at 370.960 kb on - strand, within GFF337at 370.960 kb on - strand, within GFF337at 371.076 kb on + strand, within GFF337at 371.077 kb on - strand, within GFF337at 371.077 kb on - strand, within GFF337at 371.101 kb on - strand, within GFF337at 371.450 kb on + strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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368,781 + GFF335 0.24 -0.2
368,782 - GFF335 0.24 +0.9
368,782 - GFF335 0.24 -0.1
368,782 - GFF335 0.24 -0.8
368,898 + GFF335 0.33 +0.5
368,898 + GFF335 0.33 -1.0
369,228 + GFF335 0.59 +1.0
369,228 + GFF335 0.59 -1.4
369,228 + GFF335 0.59 +1.2
369,228 + GFF335 0.59 -0.3
369,228 + GFF335 0.59 +0.8
369,228 + GFF335 0.59 +0.0
369,228 + GFF335 0.59 -1.1
369,228 + GFF335 0.59 +1.6
369,228 + GFF335 0.59 -0.5
369,229 - GFF335 0.59 -0.4
369,229 - GFF335 0.59 -0.5
369,229 - GFF335 0.59 -0.6
369,229 - GFF335 0.59 -0.5
369,229 - GFF335 0.59 +1.5
369,229 - GFF335 0.59 +0.2
369,229 - GFF335 0.59 +0.0
369,229 - GFF335 0.59 -0.3
369,229 - GFF335 0.59 +0.1
369,229 - GFF335 0.59 -0.0
369,229 - GFF335 0.59 -0.5
369,229 - GFF335 0.59 +0.2
369,229 - GFF335 0.59 -0.3
369,229 - GFF335 0.59 +0.4
369,231 + GFF335 0.59 +0.4
369,231 + GFF335 0.59 +1.2
369,231 + GFF335 0.59 +0.1
369,231 + GFF335 0.59 -0.4
369,231 + GFF335 0.59 -0.0
369,231 + GFF335 0.59 -0.9
369,231 + GFF335 0.59 +1.2
369,232 - GFF335 0.59 -0.9
369,232 - GFF335 0.59 -1.3
369,232 - GFF335 0.59 +0.0
369,232 - GFF335 0.59 +0.2
369,232 - GFF335 0.59 -0.6
369,232 - GFF335 0.59 -0.2
369,232 - GFF335 0.59 -0.8
369,327 + GFF335 0.67 +0.7
369,327 + GFF335 0.67 +0.5
369,328 - GFF335 0.67 -1.4
369,328 - GFF335 0.67 +0.2
369,328 - GFF335 0.67 +1.1
369,870 - GFF336 0.12 -1.1
369,870 - GFF336 0.12 -0.7
369,902 + GFF336 0.16 +0.7
369,902 + GFF336 0.16 +0.1
369,902 + GFF336 0.16 +0.8
369,902 + GFF336 0.16 +0.7
369,902 + GFF336 0.16 -0.1
369,903 - GFF336 0.16 +0.0
369,903 - GFF336 0.16 +1.0
369,903 - GFF336 0.16 -0.2
369,903 - GFF336 0.16 -0.4
369,965 + GFF336 0.23 -0.1
370,053 - GFF336 0.33 -0.0
370,325 + GFF336 0.66 +0.8
370,325 + GFF336 0.66 +0.2
370,325 + GFF336 0.66 +0.2
370,325 + GFF336 0.66 -1.6
370,325 + GFF336 0.66 +0.2
370,325 + GFF336 0.66 -0.5
370,326 - GFF336 0.66 +1.0
370,326 - GFF336 0.66 +1.2
370,326 - GFF336 0.66 +0.1
370,326 - GFF336 0.66 +0.3
370,326 - GFF336 0.66 +0.2
370,562 + -0.3
370,562 + -0.1
370,562 + +1.6
370,562 + +0.0
370,562 + -0.2
370,562 + -0.8
370,562 + +0.4
370,562 + +0.0
370,563 - -0.4
370,563 - -1.5
370,563 - -0.2
370,563 - -0.1
370,563 - -0.2
370,563 - -0.8
370,722 + GFF337 0.25 -1.7
370,722 + GFF337 0.25 +0.6
370,723 - GFF337 0.26 +0.1
370,723 - GFF337 0.26 +0.3
370,723 - GFF337 0.26 +0.2
370,959 + GFF337 0.65 +0.8
370,959 + GFF337 0.65 -0.9
370,959 + GFF337 0.65 -0.7
370,960 - GFF337 0.65 -0.4
370,960 - GFF337 0.65 -0.2
370,960 - GFF337 0.65 -0.9
371,076 + GFF337 0.84 +0.4
371,077 - GFF337 0.84 +0.0
371,077 - GFF337 0.84 -0.3
371,101 - GFF337 0.88 +0.2
371,450 + GFF338 0.35 -0.7
371,451 - GFF338 0.35 -0.2
371,451 - GFF338 0.35 +0.2
371,451 - GFF338 0.35 +0.0
371,451 - GFF338 0.35 -0.9
371,567 + GFF338 0.51 +0.2
371,567 + GFF338 0.51 +0.5
371,567 + GFF338 0.51 +0.2
371,567 + GFF338 0.51 -0.2
371,567 + GFF338 0.51 +0.5
371,567 + GFF338 0.51 -0.0
371,568 - GFF338 0.51 -0.1
371,568 - GFF338 0.51 -0.4
371,568 - GFF338 0.51 +0.1
371,568 - GFF338 0.51 +0.1
371,568 - GFF338 0.51 +0.3
371,568 - GFF338 0.51 -0.4
371,568 - GFF338 0.51 +1.0

Or see this region's nucleotide sequence