Strain Fitness in Variovorax sp. SCN45 around GFF3179

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3178 and GFF3179 are separated by 30 nucleotidesGFF3179 and GFF3180 are separated by 69 nucleotidesGFF3180 and GFF3181 are separated by 8 nucleotides GFF3178 - hypothetical protein, at 618,448 to 621,555 GFF3178 GFF3179 - hypothetical protein, at 621,586 to 622,590 GFF3179 GFF3180 - FIG00348182: hypothetical protein, at 622,660 to 623,316 GFF3180 GFF3181 - FIG005069: Hypothetical protein, at 623,325 to 624,128 GFF3181 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1 2at 620.599 kb on + strand, within GFF3178at 620.599 kb on + strand, within GFF3178at 620.599 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.873 kb on - strand, within GFF3178at 620.977 kb on + strand, within GFF3178at 621.007 kb on + strand, within GFF3178at 621.008 kb on - strand, within GFF3178at 621.008 kb on - strand, within GFF3178at 621.044 kb on - strand, within GFF3178at 621.044 kb on - strand, within GFF3178at 621.264 kb on + strandat 621.265 kb on - strandat 621.307 kb on + strandat 621.308 kb on - strandat 621.323 kb on + strandat 621.323 kb on + strandat 621.323 kb on + strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.533 kb on + strandat 621.533 kb on + strandat 621.534 kb on - strandat 621.534 kb on - strandat 621.553 kb on + strandat 621.819 kb on - strand, within GFF3179at 621.819 kb on - strand, within GFF3179at 621.819 kb on - strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.178 kb on + strand, within GFF3179at 622.179 kb on - strand, within GFF3179at 622.179 kb on - strand, within GFF3179at 622.179 kb on - strand, within GFF3179at 622.277 kb on + strand, within GFF3179at 622.278 kb on - strand, within GFF3179at 622.278 kb on - strand, within GFF3179at 622.278 kb on - strand, within GFF3179at 622.322 kb on + strand, within GFF3179at 622.322 kb on + strand, within GFF3179at 622.323 kb on - strand, within GFF3179at 622.323 kb on - strand, within GFF3179at 622.323 kb on - strand, within GFF3179at 622.338 kb on + strand, within GFF3179at 622.338 kb on + strand, within GFF3179at 622.447 kb on + strand, within GFF3179at 622.447 kb on + strand, within GFF3179at 622.530 kb on - strandat 622.530 kb on - strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.662 kb on - strandat 622.662 kb on - strandat 622.736 kb on + strand, within GFF3180at 623.035 kb on - strand, within GFF3180at 623.090 kb on + strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.389 kb on + strandat 623.390 kb on - strandat 623.390 kb on - strandat 623.566 kb on + strand, within GFF3181at 623.566 kb on + strand, within GFF3181at 623.566 kb on + strand, within GFF3181at 623.584 kb on + strand, within GFF3181at 623.585 kb on - strand, within GFF3181

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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620,599 + GFF3178 0.69 -0.6
620,599 + GFF3178 0.69 +0.0
620,599 + GFF3178 0.69 +0.5
620,872 + GFF3178 0.78 +0.1
620,872 + GFF3178 0.78 -0.2
620,872 + GFF3178 0.78 +0.3
620,872 + GFF3178 0.78 -0.3
620,873 - GFF3178 0.78 -0.1
620,977 + GFF3178 0.81 -0.4
621,007 + GFF3178 0.82 +0.3
621,008 - GFF3178 0.82 -0.3
621,008 - GFF3178 0.82 -0.3
621,044 - GFF3178 0.84 -0.7
621,044 - GFF3178 0.84 -1.4
621,264 + -0.1
621,265 - +0.9
621,307 + +0.7
621,308 - +0.9
621,323 + -0.6
621,323 + +0.1
621,323 + +0.2
621,324 - -0.7
621,324 - -0.8
621,324 - -1.9
621,324 - +1.3
621,324 - +1.1
621,324 - +1.2
621,324 - +0.0
621,533 + -0.7
621,533 + +0.5
621,534 - -1.2
621,534 - +0.1
621,553 + -0.4
621,819 - GFF3179 0.23 -0.4
621,819 - GFF3179 0.23 -1.5
621,819 - GFF3179 0.23 -0.9
622,082 + GFF3179 0.49 -0.6
622,082 + GFF3179 0.49 -0.7
622,082 + GFF3179 0.49 -0.8
622,082 + GFF3179 0.49 -0.3
622,083 - GFF3179 0.49 -0.1
622,083 - GFF3179 0.49 -0.4
622,083 - GFF3179 0.49 -0.2
622,083 - GFF3179 0.49 +0.7
622,178 + GFF3179 0.59 -0.7
622,179 - GFF3179 0.59 -0.8
622,179 - GFF3179 0.59 -0.6
622,179 - GFF3179 0.59 -0.5
622,277 + GFF3179 0.69 -1.1
622,278 - GFF3179 0.69 -0.7
622,278 - GFF3179 0.69 -0.8
622,278 - GFF3179 0.69 -0.0
622,322 + GFF3179 0.73 -0.3
622,322 + GFF3179 0.73 +0.7
622,323 - GFF3179 0.73 -0.0
622,323 - GFF3179 0.73 +0.7
622,323 - GFF3179 0.73 -0.0
622,338 + GFF3179 0.75 -0.4
622,338 + GFF3179 0.75 -0.3
622,447 + GFF3179 0.86 +0.2
622,447 + GFF3179 0.86 +1.1
622,530 - +0.1
622,530 - -0.8
622,596 + +0.2
622,596 + -0.7
622,596 + +0.8
622,596 + -0.5
622,596 + -0.1
622,597 - -0.5
622,597 - +0.2
622,597 - +0.6
622,597 - +0.1
622,597 - +0.4
622,597 - +2.5
622,662 - -0.5
622,662 - -0.9
622,736 + GFF3180 0.12 +0.4
623,035 - GFF3180 0.57 +1.2
623,090 + GFF3180 0.65 +0.3
623,091 - GFF3180 0.66 +0.8
623,091 - GFF3180 0.66 -0.4
623,091 - GFF3180 0.66 +0.1
623,091 - GFF3180 0.66 -0.9
623,389 + +0.7
623,390 - -0.1
623,390 - -1.0
623,566 + GFF3181 0.30 +0.1
623,566 + GFF3181 0.30 -0.3
623,566 + GFF3181 0.30 -0.1
623,584 + GFF3181 0.32 -0.5
623,585 - GFF3181 0.32 +0.1

Or see this region's nucleotide sequence