Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3147 and GFF3148 overlap by 4 nucleotides GFF3148 and GFF3149 overlap by 4 nucleotides
GFF3147 - hypothetical protein, at 580,608 to 581,993
GFF3147
GFF3148 - no description, at 581,990 to 583,102
GFF3148
GFF3149 - RND efflux system, inner membrane transporter, at 583,099 to 586,152
GFF3149
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 581.016 kb on + strand, within GFF3147 at 581.016 kb on + strand, within GFF3147 at 581.017 kb on - strand, within GFF3147 at 581.211 kb on + strand, within GFF3147 at 581.493 kb on + strand, within GFF3147 at 581.691 kb on + strand, within GFF3147 at 581.965 kb on - strand at 582.335 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.939 kb on - strand, within GFF3148 at 583.058 kb on + strand at 583.516 kb on + strand, within GFF3149 at 583.516 kb on + strand, within GFF3149 at 583.570 kb on + strand, within GFF3149 at 583.598 kb on + strand, within GFF3149 at 583.599 kb on - strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.771 kb on + strand, within GFF3149 at 583.771 kb on + strand, within GFF3149
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 581,016 + GFF3147 0.29 -1.1 581,016 + GFF3147 0.29 +0.5 581,017 - GFF3147 0.30 +0.6 581,211 + GFF3147 0.44 -0.9 581,493 + GFF3147 0.64 -0.2 581,691 + GFF3147 0.78 +0.2 581,965 - +0.6 582,335 + GFF3148 0.31 +0.2 582,932 + GFF3148 0.85 -1.5 582,932 + GFF3148 0.85 +0.5 582,933 - GFF3148 0.85 -0.3 582,933 - GFF3148 0.85 +0.1 582,933 - GFF3148 0.85 -0.1 582,933 - GFF3148 0.85 -0.1 582,938 + GFF3148 0.85 +0.5 582,938 + GFF3148 0.85 +0.3 582,938 + GFF3148 0.85 -1.1 582,939 - GFF3148 0.85 +1.2 583,058 + -0.7 583,516 + GFF3149 0.14 -0.3 583,516 + GFF3149 0.14 -0.3 583,570 + GFF3149 0.15 -0.5 583,598 + GFF3149 0.16 -0.9 583,599 - GFF3149 0.16 -0.6 583,762 + GFF3149 0.22 +0.4 583,762 + GFF3149 0.22 -0.8 583,762 + GFF3149 0.22 -1.1 583,762 + GFF3149 0.22 -0.7 583,762 + GFF3149 0.22 -2.2 583,763 - GFF3149 0.22 -0.3 583,763 - GFF3149 0.22 -0.7 583,763 - GFF3149 0.22 -0.3 583,771 + GFF3149 0.22 -0.3 583,771 + GFF3149 0.22 +3.1
Or see this region's nucleotide sequence