Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3060 and GFF3061 are separated by 58 nucleotides GFF3061 and GFF3062 overlap by 11 nucleotides GFF3062 and GFF3063 are separated by 37 nucleotides
GFF3060 - Dihydrodipicolinate synthase family, at 493,985 to 494,923
GFF3060
GFF3061 - BUG/TctC family periplasmic protein, at 494,982 to 495,953
GFF3061
GFF3062 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 495,943 to 496,653
GFF3062
GFF3063 - mandelate racemase/muconate lactonizing enzyme family protein, at 496,691 to 497,857
GFF3063
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 494.441 kb on + strand, within GFF3060 at 494.441 kb on + strand, within GFF3060 at 494.442 kb on - strand, within GFF3060 at 494.480 kb on + strand, within GFF3060 at 494.522 kb on + strand, within GFF3060 at 494.522 kb on + strand, within GFF3060 at 494.523 kb on - strand, within GFF3060 at 494.591 kb on + strand, within GFF3060 at 494.754 kb on - strand, within GFF3060 at 494.754 kb on - strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.808 kb on - strand, within GFF3060 at 494.808 kb on - strand, within GFF3060 at 495.246 kb on + strand, within GFF3061 at 495.309 kb on + strand, within GFF3061 at 495.310 kb on - strand, within GFF3061 at 495.417 kb on + strand, within GFF3061 at 495.417 kb on + strand, within GFF3061 at 495.417 kb on + strand, within GFF3061 at 495.417 kb on + strand, within GFF3061 at 495.418 kb on - strand, within GFF3061 at 495.418 kb on - strand, within GFF3061 at 495.418 kb on - strand, within GFF3061 at 495.522 kb on + strand, within GFF3061 at 495.522 kb on + strand, within GFF3061 at 495.537 kb on + strand, within GFF3061 at 495.537 kb on + strand, within GFF3061 at 495.538 kb on - strand, within GFF3061 at 495.538 kb on - strand, within GFF3061 at 495.621 kb on + strand, within GFF3061 at 495.622 kb on - strand, within GFF3061 at 495.622 kb on - strand, within GFF3061 at 495.720 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.730 kb on - strand, within GFF3061 at 495.730 kb on - strand, within GFF3061 at 495.738 kb on + strand, within GFF3061 at 496.372 kb on + strand, within GFF3062 at 496.372 kb on + strand, within GFF3062 at 496.372 kb on + strand, within GFF3062 at 496.373 kb on - strand, within GFF3062 at 496.373 kb on - strand, within GFF3062 at 496.373 kb on - strand, within GFF3062 at 496.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 494,441 + GFF3060 0.49 +0.0 494,441 + GFF3060 0.49 -0.6 494,442 - GFF3060 0.49 -2.5 494,480 + GFF3060 0.53 -0.1 494,522 + GFF3060 0.57 -0.7 494,522 + GFF3060 0.57 -0.3 494,523 - GFF3060 0.57 -0.1 494,591 + GFF3060 0.65 +0.8 494,754 - GFF3060 0.82 -0.7 494,754 - GFF3060 0.82 -0.8 494,807 + GFF3060 0.88 +0.4 494,807 + GFF3060 0.88 -0.8 494,807 + GFF3060 0.88 +1.1 494,808 - GFF3060 0.88 -1.5 494,808 - GFF3060 0.88 +0.1 495,246 + GFF3061 0.27 -0.1 495,309 + GFF3061 0.34 -0.4 495,310 - GFF3061 0.34 -0.2 495,417 + GFF3061 0.45 -0.8 495,417 + GFF3061 0.45 -0.3 495,417 + GFF3061 0.45 +0.9 495,417 + GFF3061 0.45 -0.2 495,418 - GFF3061 0.45 +0.1 495,418 - GFF3061 0.45 +0.4 495,418 - GFF3061 0.45 +0.7 495,522 + GFF3061 0.56 -0.4 495,522 + GFF3061 0.56 -0.6 495,537 + GFF3061 0.57 +1.0 495,537 + GFF3061 0.57 -0.1 495,538 - GFF3061 0.57 -1.5 495,538 - GFF3061 0.57 -0.4 495,621 + GFF3061 0.66 +1.2 495,622 - GFF3061 0.66 +0.4 495,622 - GFF3061 0.66 +0.3 495,720 + GFF3061 0.76 +0.5 495,729 + GFF3061 0.77 +0.1 495,729 + GFF3061 0.77 +0.3 495,729 + GFF3061 0.77 -0.4 495,729 + GFF3061 0.77 -0.1 495,730 - GFF3061 0.77 +0.0 495,730 - GFF3061 0.77 -0.1 495,738 + GFF3061 0.78 +0.9 496,372 + GFF3062 0.60 -0.3 496,372 + GFF3062 0.60 +0.1 496,372 + GFF3062 0.60 +0.3 496,373 - GFF3062 0.60 -0.4 496,373 - GFF3062 0.60 -0.1 496,373 - GFF3062 0.60 +0.2 496,751 + +1.3
Or see this region's nucleotide sequence