Strain Fitness in Variovorax sp. SCN45 around GFF2953

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2951 and GFF2952 overlap by 32 nucleotidesGFF2952 and GFF2953 are separated by 20 nucleotidesGFF2953 and GFF2954 are separated by 148 nucleotides GFF2951 - Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family, at 374,916 to 375,350 GFF2951 GFF2952 - Arsenic resistance protein ArsH, at 375,319 to 376,053 GFF2952 GFF2953 - Transcriptional regulator, AraC family, at 376,074 to 377,039 GFF2953 GFF2954 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 377,188 to 378,609 GFF2954 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 375.114 kb on + strand, within GFF2951at 375.115 kb on - strand, within GFF2951at 375.448 kb on + strand, within GFF2952at 375.448 kb on + strand, within GFF2952at 375.448 kb on + strand, within GFF2952at 375.449 kb on - strand, within GFF2952at 375.472 kb on + strand, within GFF2952at 375.472 kb on + strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.905 kb on - strand, within GFF2952at 375.905 kb on - strand, within GFF2952at 375.907 kb on + strand, within GFF2952at 375.907 kb on + strand, within GFF2952at 375.908 kb on - strand, within GFF2952at 375.908 kb on - strand, within GFF2952at 375.976 kb on + strand, within GFF2952at 375.976 kb on + strand, within GFF2952at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.798 kb on + strand, within GFF2953at 376.798 kb on + strand, within GFF2953at 376.798 kb on + strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.978 kb on + strandat 376.979 kb on - strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.053 kb on - strandat 377.081 kb on + strandat 377.082 kb on - strandat 377.083 kb on + strandat 377.083 kb on + strandat 377.084 kb on - strandat 377.084 kb on - strandat 377.084 kb on - strandat 377.084 kb on - strandat 377.084 kb on - strandat 377.284 kb on + strandat 377.284 kb on + strandat 377.284 kb on + strandat 377.284 kb on + strandat 377.285 kb on - strandat 377.285 kb on - strandat 377.285 kb on - strandat 377.285 kb on - strandat 377.285 kb on - strandat 377.285 kb on - strandat 377.285 kb on - strandat 377.503 kb on + strand, within GFF2954at 377.503 kb on + strand, within GFF2954at 377.504 kb on - strand, within GFF2954at 377.504 kb on - strand, within GFF2954at 377.504 kb on - strand, within GFF2954at 377.504 kb on - strand, within GFF2954at 377.530 kb on + strand, within GFF2954at 377.530 kb on + strand, within GFF2954at 377.530 kb on + strand, within GFF2954at 377.531 kb on - strand, within GFF2954at 377.728 kb on + strand, within GFF2954at 377.728 kb on + strand, within GFF2954at 377.728 kb on + strand, within GFF2954at 377.728 kb on + strand, within GFF2954at 377.729 kb on - strand, within GFF2954at 377.758 kb on + strand, within GFF2954at 377.758 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.788 kb on + strand, within GFF2954at 377.789 kb on - strand, within GFF2954at 377.789 kb on - strand, within GFF2954at 377.789 kb on - strand, within GFF2954at 377.789 kb on - strand, within GFF2954at 377.789 kb on - strand, within GFF2954at 377.872 kb on + strand, within GFF2954at 377.872 kb on + strand, within GFF2954at 377.872 kb on + strand, within GFF2954at 377.872 kb on + strand, within GFF2954at 377.872 kb on + strand, within GFF2954at 377.873 kb on - strand, within GFF2954at 377.873 kb on - strand, within GFF2954at 377.873 kb on - strand, within GFF2954at 377.873 kb on - strand, within GFF2954

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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375,114 + GFF2951 0.46 -0.7
375,115 - GFF2951 0.46 -0.5
375,448 + GFF2952 0.18 -0.1
375,448 + GFF2952 0.18 -1.1
375,448 + GFF2952 0.18 +0.3
375,449 - GFF2952 0.18 +1.5
375,472 + GFF2952 0.21 +0.2
375,472 + GFF2952 0.21 +0.5
375,473 - GFF2952 0.21 +0.3
375,473 - GFF2952 0.21 +0.7
375,473 - GFF2952 0.21 -0.4
375,538 + GFF2952 0.30 +0.4
375,538 + GFF2952 0.30 -0.8
375,538 + GFF2952 0.30 -1.5
375,539 - GFF2952 0.30 -0.6
375,539 - GFF2952 0.30 +1.0
375,539 - GFF2952 0.30 -2.2
375,539 - GFF2952 0.30 +0.3
375,539 - GFF2952 0.30 +1.2
375,539 - GFF2952 0.30 -0.0
375,539 - GFF2952 0.30 +0.5
375,905 - GFF2952 0.80 -0.3
375,905 - GFF2952 0.80 -0.1
375,907 + GFF2952 0.80 +0.0
375,907 + GFF2952 0.80 +0.1
375,908 - GFF2952 0.80 +0.7
375,908 - GFF2952 0.80 -0.1
375,976 + GFF2952 0.89 +0.1
375,976 + GFF2952 0.89 -1.3
376,792 + GFF2953 0.74 -0.8
376,792 + GFF2953 0.74 +1.5
376,792 + GFF2953 0.74 -2.1
376,792 + GFF2953 0.74 +1.5
376,792 + GFF2953 0.74 +0.3
376,792 + GFF2953 0.74 -0.0
376,792 + GFF2953 0.74 +1.0
376,792 + GFF2953 0.74 -0.1
376,792 + GFF2953 0.74 +0.3
376,792 + GFF2953 0.74 -0.3
376,793 - GFF2953 0.74 -1.7
376,793 - GFF2953 0.74 -0.3
376,793 - GFF2953 0.74 +0.0
376,793 - GFF2953 0.74 -0.3
376,793 - GFF2953 0.74 -0.3
376,798 + GFF2953 0.75 -0.0
376,798 + GFF2953 0.75 +0.2
376,798 + GFF2953 0.75 -0.1
376,799 - GFF2953 0.75 +0.9
376,799 - GFF2953 0.75 -0.4
376,799 - GFF2953 0.75 +0.7
376,799 - GFF2953 0.75 +0.5
376,799 - GFF2953 0.75 -0.8
376,799 - GFF2953 0.75 +0.3
376,799 - GFF2953 0.75 +0.2
376,799 - GFF2953 0.75 +0.5
376,978 + +0.5
376,979 - +0.8
377,051 + -0.4
377,051 + +0.1
377,051 + -0.2
377,051 + +0.9
377,051 + +1.5
377,052 - -0.0
377,052 - +0.1
377,052 - -0.3
377,052 - -0.2
377,052 - +0.5
377,052 - -0.6
377,052 - +0.1
377,052 - +0.6
377,052 - +1.2
377,053 - +1.2
377,081 + -0.5
377,082 - -0.4
377,083 + +0.0
377,083 + -2.1
377,084 - -0.3
377,084 - +1.2
377,084 - -0.5
377,084 - +1.1
377,084 - +0.0
377,284 + -0.3
377,284 + +0.8
377,284 + -0.8
377,284 + -0.7
377,285 - -1.7
377,285 - -0.9
377,285 - +0.2
377,285 - -1.3
377,285 - +0.1
377,285 - +0.0
377,285 - -0.9
377,503 + GFF2954 0.22 +0.4
377,503 + GFF2954 0.22 -0.3
377,504 - GFF2954 0.22 +1.5
377,504 - GFF2954 0.22 +0.9
377,504 - GFF2954 0.22 +0.8
377,504 - GFF2954 0.22 -1.5
377,530 + GFF2954 0.24 +0.5
377,530 + GFF2954 0.24 +0.5
377,530 + GFF2954 0.24 -1.2
377,531 - GFF2954 0.24 -0.9
377,728 + GFF2954 0.38 -0.1
377,728 + GFF2954 0.38 +0.2
377,728 + GFF2954 0.38 -0.8
377,728 + GFF2954 0.38 -0.4
377,729 - GFF2954 0.38 -0.6
377,758 + GFF2954 0.40 -0.0
377,758 + GFF2954 0.40 +0.5
377,788 + GFF2954 0.42 +1.0
377,788 + GFF2954 0.42 -0.7
377,788 + GFF2954 0.42 +0.5
377,788 + GFF2954 0.42 -0.7
377,788 + GFF2954 0.42 +0.7
377,788 + GFF2954 0.42 +0.3
377,788 + GFF2954 0.42 +0.5
377,788 + GFF2954 0.42 -0.4
377,788 + GFF2954 0.42 -1.3
377,789 - GFF2954 0.42 +0.2
377,789 - GFF2954 0.42 +0.8
377,789 - GFF2954 0.42 +0.5
377,789 - GFF2954 0.42 +0.1
377,789 - GFF2954 0.42 -0.1
377,872 + GFF2954 0.48 -2.3
377,872 + GFF2954 0.48 +0.2
377,872 + GFF2954 0.48 +0.8
377,872 + GFF2954 0.48 -0.8
377,872 + GFF2954 0.48 +1.5
377,873 - GFF2954 0.48 -0.6
377,873 - GFF2954 0.48 +0.3
377,873 - GFF2954 0.48 -1.4
377,873 - GFF2954 0.48 +1.8

Or see this region's nucleotide sequence