Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2935 and GFF2936 are separated by 0 nucleotides GFF2936 and GFF2937 are separated by 39 nucleotides GFF2937 and GFF2938 are separated by 114 nucleotides GFF2938 and GFF2939 are separated by 8 nucleotides
GFF2935 - FIG004684: SpoVR-like protein, at 362,218 to 363,741
GFF2935
GFF2936 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 363,742 to 364,182
GFF2936
GFF2937 - Transcriptional regulator, LysR family, at 364,222 to 365,190
GFF2937
GFF2938 - Rieske (2Fe-2S) domain protein, at 365,305 to 365,976
GFF2938
GFF2939 - hypothetical protein, at 365,985 to 366,830
GFF2939
Position (kb) 364
365
366 Strain fitness (log2 ratio) -2
-1
0
1
2 at 363.264 kb on + strand, within GFF2935 at 363.328 kb on + strand, within GFF2935 at 363.328 kb on + strand, within GFF2935 at 363.328 kb on + strand, within GFF2935 at 363.328 kb on + strand, within GFF2935 at 363.329 kb on - strand, within GFF2935 at 363.505 kb on + strand, within GFF2935 at 363.505 kb on + strand, within GFF2935 at 363.505 kb on + strand, within GFF2935 at 363.505 kb on + strand, within GFF2935 at 363.505 kb on + strand, within GFF2935 at 363.505 kb on + strand, within GFF2935 at 363.506 kb on - strand, within GFF2935 at 363.506 kb on - strand, within GFF2935 at 363.506 kb on - strand, within GFF2935 at 363.506 kb on - strand, within GFF2935 at 363.506 kb on - strand, within GFF2935 at 363.717 kb on + strand at 363.718 kb on - strand at 363.718 kb on - strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.736 kb on + strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.737 kb on - strand at 363.739 kb on + strand at 363.739 kb on + strand at 363.739 kb on + strand at 363.739 kb on + strand at 363.739 kb on + strand at 363.740 kb on - strand at 363.740 kb on - strand at 363.740 kb on - strand at 363.740 kb on - strand at 363.740 kb on - strand at 363.740 kb on - strand at 363.740 kb on - strand at 363.773 kb on + strand at 363.773 kb on + strand at 363.774 kb on - strand at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.824 kb on + strand, within GFF2936 at 363.825 kb on - strand, within GFF2936 at 363.825 kb on - strand, within GFF2936 at 363.825 kb on - strand, within GFF2936 at 363.935 kb on + strand, within GFF2936 at 363.935 kb on + strand, within GFF2936 at 363.935 kb on + strand, within GFF2936 at 363.935 kb on + strand, within GFF2936 at 363.936 kb on - strand, within GFF2936 at 364.115 kb on + strand, within GFF2936 at 364.115 kb on + strand, within GFF2936 at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.191 kb on + strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.192 kb on - strand at 364.223 kb on + strand at 364.223 kb on + strand at 364.223 kb on + strand at 364.224 kb on - strand at 364.224 kb on - strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.271 kb on + strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.272 kb on - strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.274 kb on + strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.275 kb on - strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.280 kb on + strand at 364.281 kb on - strand at 364.281 kb on - strand at 364.281 kb on - strand at 364.281 kb on - strand at 364.281 kb on - strand at 364.281 kb on - strand at 364.281 kb on - strand at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.346 kb on + strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.347 kb on - strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.370 kb on + strand, within GFF2937 at 364.371 kb on - strand, within GFF2937 at 364.371 kb on - strand, within GFF2937 at 364.371 kb on - strand, within GFF2937 at 364.371 kb on - strand, within GFF2937 at 364.371 kb on - strand, within GFF2937 at 364.661 kb on + strand, within GFF2937 at 364.661 kb on + strand, within GFF2937 at 364.662 kb on - strand, within GFF2937 at 364.662 kb on - strand, within GFF2937 at 364.662 kb on - strand, within GFF2937 at 364.685 kb on + strand, within GFF2937 at 364.685 kb on + strand, within GFF2937 at 364.685 kb on + strand, within GFF2937 at 364.686 kb on - strand, within GFF2937 at 364.686 kb on - strand, within GFF2937 at 364.686 kb on - strand, within GFF2937 at 364.686 kb on - strand, within GFF2937 at 364.686 kb on - strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.748 kb on + strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.749 kb on - strand, within GFF2937 at 364.750 kb on - strand, within GFF2937 at 365.260 kb on + strand at 365.261 kb on - strand at 365.261 kb on - strand at 365.261 kb on - strand at 365.261 kb on - strand at 365.518 kb on + strand, within GFF2938 at 365.518 kb on + strand, within GFF2938 at 365.519 kb on - strand, within GFF2938 at 365.533 kb on + strand, within GFF2938 at 365.533 kb on + strand, within GFF2938 at 365.534 kb on - strand, within GFF2938 at 366.159 kb on + strand, within GFF2939 at 366.165 kb on + strand, within GFF2939 at 366.166 kb on - strand, within GFF2939
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 363,264 + GFF2935 0.69 -0.9 363,328 + GFF2935 0.73 -0.2 363,328 + GFF2935 0.73 +0.7 363,328 + GFF2935 0.73 +0.9 363,328 + GFF2935 0.73 +0.6 363,329 - GFF2935 0.73 +0.4 363,505 + GFF2935 0.84 +0.2 363,505 + GFF2935 0.84 +0.5 363,505 + GFF2935 0.84 -0.2 363,505 + GFF2935 0.84 -0.1 363,505 + GFF2935 0.84 -0.4 363,505 + GFF2935 0.84 +0.2 363,506 - GFF2935 0.85 +0.8 363,506 - GFF2935 0.85 -0.3 363,506 - GFF2935 0.85 +0.4 363,506 - GFF2935 0.85 -0.4 363,506 - GFF2935 0.85 -0.7 363,717 + -0.5 363,718 - +0.2 363,718 - -0.3 363,736 + +1.5 363,736 + +2.5 363,736 + -0.4 363,736 + -0.7 363,736 + -0.3 363,736 + +0.4 363,736 + -0.2 363,736 + +0.7 363,736 + +1.0 363,736 + -1.1 363,736 + -0.1 363,736 + +0.2 363,736 + +0.8 363,737 - +0.2 363,737 - -0.1 363,737 - -0.7 363,737 - -0.0 363,737 - -0.1 363,737 - -0.2 363,737 - -1.2 363,737 - -1.1 363,737 - -2.0 363,739 + -0.4 363,739 + -0.9 363,739 + -0.5 363,739 + -0.7 363,739 + -1.1 363,740 - +0.5 363,740 - -1.7 363,740 - -0.0 363,740 - -0.0 363,740 - +0.1 363,740 - -0.7 363,740 - -1.5 363,773 + +0.3 363,773 + -0.9 363,774 - -0.7 363,824 + GFF2936 0.19 -1.2 363,824 + GFF2936 0.19 +0.3 363,824 + GFF2936 0.19 +0.0 363,824 + GFF2936 0.19 -0.3 363,824 + GFF2936 0.19 -1.2 363,824 + GFF2936 0.19 -0.9 363,824 + GFF2936 0.19 -1.2 363,824 + GFF2936 0.19 +0.2 363,825 - GFF2936 0.19 -0.9 363,825 - GFF2936 0.19 -0.4 363,825 - GFF2936 0.19 +0.4 363,935 + GFF2936 0.44 -2.0 363,935 + GFF2936 0.44 -0.2 363,935 + GFF2936 0.44 -1.5 363,935 + GFF2936 0.44 -0.6 363,936 - GFF2936 0.44 -1.0 364,115 + GFF2936 0.85 -0.6 364,115 + GFF2936 0.85 -1.3 364,191 + -0.2 364,191 + +0.8 364,191 + -0.3 364,191 + +0.9 364,191 + -0.3 364,191 + +0.8 364,191 + +1.5 364,191 + +0.3 364,191 + +0.8 364,191 + -0.2 364,191 + -1.0 364,191 + +0.5 364,191 + -1.1 364,191 + +0.4 364,191 + -0.3 364,191 + +0.5 364,191 + +0.1 364,191 + -0.2 364,191 + -0.1 364,192 - +0.1 364,192 - -0.1 364,192 - +0.7 364,192 - -0.3 364,192 - -0.1 364,192 - -1.1 364,192 - +0.4 364,192 - +0.5 364,192 - -0.1 364,223 + -0.9 364,223 + -0.1 364,223 + -0.1 364,224 - -0.9 364,224 - -0.1 364,271 + -0.5 364,271 + -0.2 364,271 + -0.3 364,271 + +0.3 364,271 + -0.6 364,271 + -1.1 364,271 + -0.1 364,271 + -0.2 364,271 + -0.7 364,272 - -1.1 364,272 - +0.7 364,272 - +1.4 364,272 - +0.5 364,272 - -0.7 364,272 - -1.0 364,272 - -0.8 364,272 - +0.3 364,272 - -0.5 364,272 - -0.2 364,272 - -0.4 364,272 - +0.0 364,274 + -0.0 364,274 + +0.9 364,274 + +1.1 364,274 + +0.2 364,274 + -0.1 364,274 + +0.3 364,274 + -0.2 364,274 + -0.3 364,274 + -0.7 364,274 + +0.9 364,274 + +0.1 364,275 - -0.6 364,275 - +0.1 364,275 - +0.1 364,275 - -0.4 364,275 - +0.9 364,275 - +0.2 364,275 - -0.6 364,275 - -1.9 364,275 - +1.2 364,275 - -0.0 364,280 + +0.2 364,280 + -0.7 364,280 + -1.2 364,280 + +1.7 364,280 + +0.8 364,280 + -1.3 364,280 + -0.3 364,280 + -2.0 364,280 + +0.2 364,280 + +1.5 364,280 + -0.7 364,280 + -0.6 364,280 + -0.0 364,281 - -0.4 364,281 - +0.2 364,281 - -0.1 364,281 - +1.5 364,281 - +0.2 364,281 - -1.2 364,281 - -0.1 364,346 + GFF2937 0.13 -0.1 364,346 + GFF2937 0.13 +0.5 364,346 + GFF2937 0.13 -0.8 364,346 + GFF2937 0.13 -0.4 364,346 + GFF2937 0.13 +1.5 364,346 + GFF2937 0.13 -0.1 364,346 + GFF2937 0.13 -0.2 364,346 + GFF2937 0.13 +0.3 364,346 + GFF2937 0.13 -0.7 364,346 + GFF2937 0.13 +1.1 364,346 + GFF2937 0.13 +0.2 364,347 - GFF2937 0.13 -1.2 364,347 - GFF2937 0.13 -0.5 364,347 - GFF2937 0.13 -0.7 364,347 - GFF2937 0.13 +0.2 364,347 - GFF2937 0.13 -0.5 364,347 - GFF2937 0.13 +0.2 364,347 - GFF2937 0.13 +1.4 364,347 - GFF2937 0.13 -1.7 364,347 - GFF2937 0.13 -1.1 364,347 - GFF2937 0.13 +1.5 364,347 - GFF2937 0.13 -0.5 364,347 - GFF2937 0.13 -0.1 364,370 + GFF2937 0.15 +0.5 364,370 + GFF2937 0.15 -0.3 364,370 + GFF2937 0.15 -0.8 364,370 + GFF2937 0.15 -0.1 364,370 + GFF2937 0.15 -0.7 364,370 + GFF2937 0.15 -0.3 364,370 + GFF2937 0.15 -0.2 364,370 + GFF2937 0.15 -0.2 364,371 - GFF2937 0.15 -0.1 364,371 - GFF2937 0.15 +0.2 364,371 - GFF2937 0.15 -1.8 364,371 - GFF2937 0.15 +0.2 364,371 - GFF2937 0.15 +0.8 364,661 + GFF2937 0.45 -1.0 364,661 + GFF2937 0.45 -0.5 364,662 - GFF2937 0.45 +0.2 364,662 - GFF2937 0.45 -0.6 364,662 - GFF2937 0.45 -1.1 364,685 + GFF2937 0.48 -1.1 364,685 + GFF2937 0.48 +0.1 364,685 + GFF2937 0.48 -0.2 364,686 - GFF2937 0.48 +0.0 364,686 - GFF2937 0.48 +0.2 364,686 - GFF2937 0.48 -0.8 364,686 - GFF2937 0.48 -0.0 364,686 - GFF2937 0.48 -0.5 364,748 + GFF2937 0.54 +0.4 364,748 + GFF2937 0.54 -0.2 364,748 + GFF2937 0.54 -0.8 364,748 + GFF2937 0.54 +0.1 364,748 + GFF2937 0.54 -0.2 364,748 + GFF2937 0.54 -0.4 364,748 + GFF2937 0.54 -0.5 364,748 + GFF2937 0.54 -0.2 364,748 + GFF2937 0.54 -0.9 364,748 + GFF2937 0.54 -1.7 364,748 + GFF2937 0.54 +0.4 364,748 + GFF2937 0.54 +0.4 364,748 + GFF2937 0.54 -0.9 364,748 + GFF2937 0.54 -1.3 364,748 + GFF2937 0.54 +0.1 364,748 + GFF2937 0.54 -1.2 364,748 + GFF2937 0.54 -0.0 364,748 + GFF2937 0.54 -0.3 364,748 + GFF2937 0.54 +0.7 364,748 + GFF2937 0.54 -1.5 364,748 + GFF2937 0.54 -0.4 364,748 + GFF2937 0.54 +0.1 364,748 + GFF2937 0.54 -1.5 364,749 - GFF2937 0.54 +0.5 364,749 - GFF2937 0.54 -0.6 364,749 - GFF2937 0.54 +0.2 364,749 - GFF2937 0.54 -0.3 364,749 - GFF2937 0.54 -1.0 364,749 - GFF2937 0.54 -0.6 364,749 - GFF2937 0.54 -0.8 364,749 - GFF2937 0.54 -0.7 364,749 - GFF2937 0.54 +0.3 364,749 - GFF2937 0.54 -0.3 364,749 - GFF2937 0.54 +0.8 364,749 - GFF2937 0.54 -0.5 364,749 - GFF2937 0.54 +0.6 364,749 - GFF2937 0.54 -0.2 364,749 - GFF2937 0.54 -0.6 364,749 - GFF2937 0.54 -0.7 364,749 - GFF2937 0.54 -0.6 364,749 - GFF2937 0.54 -0.6 364,749 - GFF2937 0.54 -0.9 364,749 - GFF2937 0.54 +0.1 364,749 - GFF2937 0.54 -1.8 364,749 - GFF2937 0.54 -0.9 364,749 - GFF2937 0.54 +0.3 364,749 - GFF2937 0.54 -0.1 364,749 - GFF2937 0.54 +0.1 364,750 - GFF2937 0.54 +0.5 365,260 + -0.8 365,261 - -0.2 365,261 - +1.5 365,261 - +1.5 365,261 - +0.9 365,518 + GFF2938 0.32 +0.7 365,518 + GFF2938 0.32 -1.1 365,519 - GFF2938 0.32 +2.1 365,533 + GFF2938 0.34 -0.8 365,533 + GFF2938 0.34 +0.5 365,534 - GFF2938 0.34 -0.2 366,159 + GFF2939 0.21 -0.8 366,165 + GFF2939 0.21 -0.5 366,166 - GFF2939 0.21 -0.2
Or see this region's nucleotide sequence