Strain Fitness in Variovorax sp. SCN45 around GFF281

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF280 and GFF281 are separated by 172 nucleotidesGFF281 and GFF282 are separated by 61 nucleotides GFF280 - BUG/TctC family periplasmic protein, at 314,718 to 315,692 GFF280 GFF281 - Outer membrane porin protein 32 precursor, at 315,865 to 316,884 GFF281 GFF282 - hypothetical protein, at 316,946 to 318,133 GFF282 Position (kb) 315 316 317Strain fitness (log2 ratio) -2 -1 0 1 2at 314.877 kb on + strand, within GFF280at 314.877 kb on + strand, within GFF280at 314.877 kb on + strand, within GFF280at 314.878 kb on - strand, within GFF280at 314.988 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.201 kb on + strand, within GFF280at 315.201 kb on + strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.279 kb on + strand, within GFF280at 315.279 kb on + strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.845 kb on - strandat 315.845 kb on - strandat 316.207 kb on + strand, within GFF281at 316.208 kb on - strand, within GFF281at 316.348 kb on + strand, within GFF281at 316.348 kb on + strand, within GFF281at 316.349 kb on - strand, within GFF281at 316.379 kb on - strand, within GFF281at 316.426 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.448 kb on - strand, within GFF281at 316.480 kb on + strand, within GFF281at 316.480 kb on + strand, within GFF281at 316.481 kb on - strand, within GFF281at 316.481 kb on - strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.570 kb on + strand, within GFF281at 316.570 kb on + strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.726 kb on + strand, within GFF281at 316.726 kb on + strand, within GFF281at 316.727 kb on - strand, within GFF281at 316.727 kb on - strand, within GFF281at 316.727 kb on - strand, within GFF281at 316.759 kb on + strand, within GFF281at 316.759 kb on + strand, within GFF281at 316.759 kb on + strand, within GFF281at 316.760 kb on + strand, within GFF281at 316.760 kb on - strand, within GFF281at 316.760 kb on - strand, within GFF281at 316.760 kb on - strand, within GFF281at 316.801 kb on + strandat 316.801 kb on + strandat 316.801 kb on + strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.802 kb on - strandat 316.808 kb on + strandat 316.897 kb on - strandat 316.897 kb on - strandat 317.040 kb on + strandat 317.040 kb on + strandat 317.041 kb on - strandat 317.041 kb on - strandat 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.220 kb on + strand, within GFF282at 317.221 kb on - strand, within GFF282at 317.221 kb on - strand, within GFF282at 317.316 kb on + strand, within GFF282at 317.317 kb on - strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.352 kb on + strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.353 kb on - strand, within GFF282at 317.425 kb on + strand, within GFF282at 317.613 kb on + strand, within GFF282at 317.613 kb on + strand, within GFF282at 317.614 kb on - strand, within GFF282at 317.614 kb on - strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.673 kb on + strand, within GFF282at 317.674 kb on - strand, within GFF282at 317.697 kb on + strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282at 317.698 kb on - strand, within GFF282

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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314,877 + GFF280 0.16 +0.4
314,877 + GFF280 0.16 +0.2
314,877 + GFF280 0.16 -2.4
314,878 - GFF280 0.16 +0.6
314,988 + GFF280 0.28 -0.6
315,054 + GFF280 0.34 +0.0
315,054 + GFF280 0.34 +0.5
315,054 + GFF280 0.34 +0.2
315,055 - GFF280 0.35 -1.4
315,055 - GFF280 0.35 +0.2
315,055 - GFF280 0.35 +0.4
315,055 - GFF280 0.35 +1.2
315,201 + GFF280 0.50 -1.3
315,201 + GFF280 0.50 -2.1
315,202 - GFF280 0.50 -0.5
315,202 - GFF280 0.50 -0.7
315,202 - GFF280 0.50 -0.1
315,202 - GFF280 0.50 +0.1
315,279 + GFF280 0.58 -0.0
315,279 + GFF280 0.58 -0.0
315,280 - GFF280 0.58 -0.2
315,280 - GFF280 0.58 +1.2
315,280 - GFF280 0.58 +0.0
315,845 - +0.1
315,845 - -1.0
316,207 + GFF281 0.34 +0.2
316,208 - GFF281 0.34 +1.5
316,348 + GFF281 0.47 -0.3
316,348 + GFF281 0.47 +1.2
316,349 - GFF281 0.47 +0.8
316,379 - GFF281 0.50 -0.1
316,426 + GFF281 0.55 -0.1
316,447 + GFF281 0.57 +1.1
316,447 + GFF281 0.57 +0.1
316,447 + GFF281 0.57 +0.7
316,447 + GFF281 0.57 -0.2
316,448 - GFF281 0.57 +2.0
316,480 + GFF281 0.60 +0.2
316,480 + GFF281 0.60 +0.2
316,481 - GFF281 0.60 +0.6
316,481 - GFF281 0.60 -0.3
316,537 + GFF281 0.66 -0.0
316,537 + GFF281 0.66 -0.0
316,537 + GFF281 0.66 +0.0
316,537 + GFF281 0.66 -0.0
316,538 - GFF281 0.66 +0.2
316,538 - GFF281 0.66 +0.3
316,538 - GFF281 0.66 +0.2
316,538 - GFF281 0.66 +0.4
316,561 + GFF281 0.68 -0.3
316,561 + GFF281 0.68 +0.6
316,561 + GFF281 0.68 -1.1
316,561 + GFF281 0.68 -0.1
316,561 + GFF281 0.68 +0.2
316,562 - GFF281 0.68 -0.8
316,562 - GFF281 0.68 -0.5
316,562 - GFF281 0.68 +0.2
316,562 - GFF281 0.68 +0.5
316,570 + GFF281 0.69 +0.2
316,570 + GFF281 0.69 -0.6
316,571 - GFF281 0.69 +0.6
316,571 - GFF281 0.69 +0.2
316,571 - GFF281 0.69 -0.1
316,726 + GFF281 0.84 +0.2
316,726 + GFF281 0.84 -1.4
316,727 - GFF281 0.85 -0.7
316,727 - GFF281 0.85 -0.4
316,727 - GFF281 0.85 -1.6
316,759 + GFF281 0.88 +0.1
316,759 + GFF281 0.88 -0.1
316,759 + GFF281 0.88 +1.2
316,760 + GFF281 0.88 +1.2
316,760 - GFF281 0.88 -0.5
316,760 - GFF281 0.88 -0.3
316,760 - GFF281 0.88 -0.5
316,801 + -0.1
316,801 + -0.3
316,801 + -0.6
316,802 - +0.8
316,802 - -1.6
316,802 - +2.1
316,802 - -0.6
316,802 - +0.8
316,808 + +0.2
316,897 - -1.0
316,897 - -0.4
317,040 + +0.2
317,040 + +0.2
317,041 - -0.3
317,041 - -1.8
317,220 + GFF282 0.23 -0.2
317,220 + GFF282 0.23 -1.0
317,220 + GFF282 0.23 -0.2
317,220 + GFF282 0.23 +1.2
317,220 + GFF282 0.23 -0.3
317,220 + GFF282 0.23 -0.7
317,220 + GFF282 0.23 -0.2
317,220 + GFF282 0.23 -0.6
317,220 + GFF282 0.23 +0.3
317,220 + GFF282 0.23 -0.2
317,221 - GFF282 0.23 -0.0
317,221 - GFF282 0.23 +0.4
317,316 + GFF282 0.31 -0.1
317,317 - GFF282 0.31 +0.1
317,352 + GFF282 0.34 -1.8
317,352 + GFF282 0.34 -0.4
317,352 + GFF282 0.34 +0.4
317,352 + GFF282 0.34 +0.1
317,352 + GFF282 0.34 +0.2
317,352 + GFF282 0.34 -0.1
317,353 - GFF282 0.34 +0.7
317,353 - GFF282 0.34 -0.6
317,353 - GFF282 0.34 -0.8
317,425 + GFF282 0.40 +0.1
317,613 + GFF282 0.56 -0.0
317,613 + GFF282 0.56 +0.4
317,614 - GFF282 0.56 -0.2
317,614 - GFF282 0.56 +1.0
317,673 + GFF282 0.61 -0.6
317,673 + GFF282 0.61 +1.4
317,673 + GFF282 0.61 -0.8
317,674 - GFF282 0.61 -1.6
317,697 + GFF282 0.63 -1.0
317,698 - GFF282 0.63 -0.2
317,698 - GFF282 0.63 -0.2
317,698 - GFF282 0.63 -0.2
317,698 - GFF282 0.63 +0.1

Or see this region's nucleotide sequence