Strain Fitness in Variovorax sp. SCN45 around GFF2796

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2793 and GFF2794 overlap by 4 nucleotidesGFF2794 and GFF2795 are separated by 27 nucleotidesGFF2795 and GFF2796 are separated by 122 nucleotidesGFF2796 and GFF2797 overlap by 14 nucleotidesGFF2797 and GFF2798 are separated by 8 nucleotides GFF2793 - Tricarboxylate transport protein TctC, at 224,081 to 225,073 GFF2793 GFF2794 - Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12), at 225,070 to 225,546 GFF2794 GFF2795 - no description, at 225,574 to 225,687 GFF2795 GFF2796 - Dihydrodipicolinate synthase family protein PP2639, at 225,810 to 226,706 GFF2796 GFF2797 - Molybdopterin synthase sulfur carrier subunit, at 226,693 to 226,944 GFF2797 GFF2798 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 226,953 to 228,191 GFF2798 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.855 kb on + strand, within GFF2793at 224.855 kb on + strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.981 kb on + strandat 224.982 kb on - strandat 224.982 kb on - strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.021 kb on - strandat 225.021 kb on - strandat 225.021 kb on - strandat 225.071 kb on + strandat 225.071 kb on + strandat 225.071 kb on + strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.194 kb on + strand, within GFF2794at 225.194 kb on + strand, within GFF2794at 225.194 kb on + strand, within GFF2794at 225.194 kb on + strand, within GFF2794at 225.195 kb on - strand, within GFF2794at 225.195 kb on - strand, within GFF2794at 225.195 kb on - strand, within GFF2794at 225.381 kb on - strand, within GFF2794at 225.381 kb on - strand, within GFF2794at 225.568 kb on + strandat 225.569 kb on - strandat 225.569 kb on - strandat 225.834 kb on - strandat 225.834 kb on - strandat 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.245 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.817 kb on + strand, within GFF2797at 226.817 kb on + strand, within GFF2797at 226.818 kb on - strand, within GFF2797at 226.925 kb on + strandat 226.925 kb on + strandat 227.073 kb on + strandat 227.199 kb on - strand, within GFF2798at 227.199 kb on - strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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224,852 + GFF2793 0.78 -1.0
224,852 + GFF2793 0.78 +1.0
224,852 + GFF2793 0.78 +0.3
224,852 + GFF2793 0.78 +0.1
224,853 - GFF2793 0.78 +1.3
224,853 - GFF2793 0.78 +0.5
224,853 - GFF2793 0.78 +1.5
224,855 + GFF2793 0.78 -0.4
224,855 + GFF2793 0.78 +0.9
224,856 - GFF2793 0.78 -0.1
224,856 - GFF2793 0.78 -0.3
224,856 - GFF2793 0.78 -0.4
224,856 - GFF2793 0.78 +0.0
224,856 - GFF2793 0.78 +0.1
224,856 - GFF2793 0.78 -0.2
224,856 - GFF2793 0.78 +0.3
224,903 + GFF2793 0.83 -0.5
224,903 + GFF2793 0.83 -0.3
224,903 + GFF2793 0.83 -0.5
224,903 + GFF2793 0.83 +0.5
224,904 - GFF2793 0.83 -0.1
224,904 - GFF2793 0.83 +0.3
224,904 - GFF2793 0.83 -0.1
224,981 + +0.5
224,982 - +0.2
224,982 - -0.5
225,020 + -0.5
225,020 + +0.1
225,020 + +0.6
225,020 + +0.5
225,020 + -1.1
225,021 - +1.3
225,021 - -0.3
225,021 - +0.4
225,071 + -1.3
225,071 + -0.5
225,071 + -0.4
225,072 - -0.3
225,072 - -1.3
225,072 - +0.2
225,072 - -0.0
225,072 - -2.1
225,072 - -0.3
225,194 + GFF2794 0.26 -0.9
225,194 + GFF2794 0.26 -0.2
225,194 + GFF2794 0.26 -1.0
225,194 + GFF2794 0.26 +0.3
225,195 - GFF2794 0.26 -0.0
225,195 - GFF2794 0.26 -0.9
225,195 - GFF2794 0.26 -0.3
225,381 - GFF2794 0.65 -0.0
225,381 - GFF2794 0.65 +1.1
225,568 + -0.5
225,569 - -1.1
225,569 - -0.5
225,834 - -0.1
225,834 - -1.5
226,155 + GFF2796 0.38 -0.2
226,155 + GFF2796 0.38 +0.0
226,155 + GFF2796 0.38 +0.5
226,155 + GFF2796 0.38 -0.2
226,155 + GFF2796 0.38 -0.1
226,155 + GFF2796 0.38 -0.3
226,156 - GFF2796 0.39 -0.4
226,156 - GFF2796 0.39 -1.8
226,156 - GFF2796 0.39 -0.2
226,156 - GFF2796 0.39 -0.7
226,156 - GFF2796 0.39 -0.6
226,156 - GFF2796 0.39 -0.2
226,156 - GFF2796 0.39 -0.4
226,156 - GFF2796 0.39 -1.1
226,156 - GFF2796 0.39 +0.0
226,233 + GFF2796 0.47 -1.3
226,233 + GFF2796 0.47 -0.1
226,233 + GFF2796 0.47 -0.8
226,234 - GFF2796 0.47 -0.7
226,234 - GFF2796 0.47 -0.9
226,234 - GFF2796 0.47 -0.3
226,245 + GFF2796 0.48 +0.5
226,378 + GFF2796 0.63 +1.0
226,378 + GFF2796 0.63 -1.5
226,378 + GFF2796 0.63 -1.0
226,379 - GFF2796 0.63 +0.5
226,379 - GFF2796 0.63 -0.3
226,817 + GFF2797 0.49 -1.7
226,817 + GFF2797 0.49 -0.4
226,818 - GFF2797 0.50 +0.2
226,925 + +0.5
226,925 + -0.7
227,073 + +0.2
227,199 - GFF2798 0.20 -1.4
227,199 - GFF2798 0.20 +0.3
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -1.9
227,578 + GFF2798 0.50 -0.1
227,578 + GFF2798 0.50 +0.1
227,578 + GFF2798 0.50 -0.3
227,578 + GFF2798 0.50 +0.3
227,578 + GFF2798 0.50 -0.5
227,578 + GFF2798 0.50 -0.3
227,578 + GFF2798 0.50 -0.6
227,578 + GFF2798 0.50 -1.5
227,578 + GFF2798 0.50 -1.4
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -0.5
227,579 - GFF2798 0.51 -0.4
227,579 - GFF2798 0.51 -0.2
227,579 - GFF2798 0.51 -0.5
227,579 - GFF2798 0.51 -0.3
227,579 - GFF2798 0.51 -0.6
227,579 - GFF2798 0.51 -0.1

Or see this region's nucleotide sequence