Strain Fitness in Variovorax sp. SCN45 around GFF2783

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2782 and GFF2783 overlap by 4 nucleotidesGFF2783 and GFF2784 are separated by 140 nucleotides GFF2782 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 211,770 to 212,978 GFF2782 GFF2783 - Transcriptional regulator, LysR family, at 212,975 to 213,862 GFF2783 GFF2784 - Peptidase, M20/M25/M40 family, at 214,003 to 215,358 GFF2784 Position (kb) 212 213 214Strain fitness (log2 ratio) -1 0 1at 212.005 kb on + strand, within GFF2782at 212.005 kb on + strand, within GFF2782at 212.006 kb on - strand, within GFF2782at 212.006 kb on - strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.505 kb on + strand, within GFF2782at 212.505 kb on + strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.635 kb on - strand, within GFF2782at 212.635 kb on - strand, within GFF2782at 212.635 kb on - strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.976 kb on + strandat 212.976 kb on + strandat 212.977 kb on - strandat 212.977 kb on - strandat 212.977 kb on - strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.058 kb on - strandat 213.058 kb on - strandat 213.132 kb on + strand, within GFF2783at 213.132 kb on + strand, within GFF2783at 213.132 kb on + strand, within GFF2783at 213.132 kb on + strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.421 kb on - strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.899 kb on + strandat 213.899 kb on + strandat 213.899 kb on + strandat 213.899 kb on + strandat 213.900 kb on - strandat 213.917 kb on + strandat 214.115 kb on + strandat 214.116 kb on - strandat 214.116 kb on - strandat 214.116 kb on - strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.139 kb on - strand, within GFF2784at 214.139 kb on - strand, within GFF2784at 214.139 kb on - strand, within GFF2784at 214.139 kb on - strand, within GFF2784at 214.457 kb on - strand, within GFF2784at 214.497 kb on - strand, within GFF2784

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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212,005 + GFF2782 0.19 -0.4
212,005 + GFF2782 0.19 -0.3
212,006 - GFF2782 0.20 -0.3
212,006 - GFF2782 0.20 -0.4
212,217 + GFF2782 0.37 +0.5
212,217 + GFF2782 0.37 -1.5
212,217 + GFF2782 0.37 -0.2
212,217 + GFF2782 0.37 -0.9
212,217 + GFF2782 0.37 +0.3
212,217 + GFF2782 0.37 +0.8
212,218 - GFF2782 0.37 -0.1
212,218 - GFF2782 0.37 -0.4
212,218 - GFF2782 0.37 -0.2
212,218 - GFF2782 0.37 +0.3
212,505 + GFF2782 0.61 -0.4
212,505 + GFF2782 0.61 -0.4
212,506 - GFF2782 0.61 -0.8
212,506 - GFF2782 0.61 -0.4
212,506 - GFF2782 0.61 -0.2
212,506 - GFF2782 0.61 +0.1
212,634 + GFF2782 0.71 -0.8
212,634 + GFF2782 0.71 +0.0
212,634 + GFF2782 0.71 +0.3
212,634 + GFF2782 0.71 +0.9
212,634 + GFF2782 0.71 -0.3
212,635 - GFF2782 0.72 -0.2
212,635 - GFF2782 0.72 -0.1
212,635 - GFF2782 0.72 +1.1
212,795 + GFF2782 0.85 +0.2
212,795 + GFF2782 0.85 +0.3
212,795 + GFF2782 0.85 -0.2
212,795 + GFF2782 0.85 -0.4
212,795 + GFF2782 0.85 -0.1
212,795 + GFF2782 0.85 -0.6
212,795 + GFF2782 0.85 -0.4
212,795 + GFF2782 0.85 -0.6
212,795 + GFF2782 0.85 +1.0
212,795 + GFF2782 0.85 -0.7
212,796 - GFF2782 0.85 -0.7
212,796 - GFF2782 0.85 +0.2
212,796 - GFF2782 0.85 +0.1
212,796 - GFF2782 0.85 +0.0
212,796 - GFF2782 0.85 -0.1
212,796 - GFF2782 0.85 +0.3
212,796 - GFF2782 0.85 +1.2
212,976 + -0.4
212,976 + +1.5
212,977 - +0.1
212,977 - +0.7
212,977 - +0.2
213,057 + +0.5
213,057 + -0.4
213,057 + -0.2
213,057 + +0.5
213,057 + -0.5
213,058 - +0.0
213,058 - +1.1
213,132 + GFF2783 0.18 -0.3
213,132 + GFF2783 0.18 +0.0
213,132 + GFF2783 0.18 -0.6
213,132 + GFF2783 0.18 +0.4
213,133 - GFF2783 0.18 +0.9
213,133 - GFF2783 0.18 -0.3
213,133 - GFF2783 0.18 +0.2
213,133 - GFF2783 0.18 +0.2
213,421 - GFF2783 0.50 +0.1
213,456 + GFF2783 0.54 -0.5
213,456 + GFF2783 0.54 +0.6
213,456 + GFF2783 0.54 +0.0
213,456 + GFF2783 0.54 -0.3
213,456 + GFF2783 0.54 +0.4
213,456 + GFF2783 0.54 -0.1
213,456 + GFF2783 0.54 -0.2
213,456 + GFF2783 0.54 -0.5
213,456 + GFF2783 0.54 +0.2
213,456 + GFF2783 0.54 -0.1
213,457 - GFF2783 0.54 -0.3
213,457 - GFF2783 0.54 +0.6
213,457 - GFF2783 0.54 -0.0
213,457 - GFF2783 0.54 +0.9
213,457 - GFF2783 0.54 -0.7
213,899 + -0.7
213,899 + -1.1
213,899 + -0.3
213,899 + +0.0
213,900 - +0.2
213,917 + -0.3
214,115 + -0.0
214,116 - -0.2
214,116 - -0.1
214,116 - -0.3
214,138 + +0.0
214,138 + -0.1
214,138 + -0.6
214,139 - GFF2784 0.10 -0.4
214,139 - GFF2784 0.10 +0.1
214,139 - GFF2784 0.10 -0.7
214,139 - GFF2784 0.10 +0.6
214,457 - GFF2784 0.33 +0.9
214,497 - GFF2784 0.36 +0.3

Or see this region's nucleotide sequence