Strain Fitness in Variovorax sp. SCN45 around GFF2629

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2627 and GFF2628 are separated by 33 nucleotidesGFF2628 and GFF2629 are separated by 68 nucleotidesGFF2629 and GFF2630 are separated by 101 nucleotidesGFF2630 and GFF2631 are separated by 59 nucleotidesGFF2631 and GFF2632 are separated by 32 nucleotides GFF2627 - Chorismate synthase (EC 4.2.3.5), at 40,417 to 41,526 GFF2627 GFF2628 - hypothetical protein, at 41,560 to 41,745 GFF2628 GFF2629 - hypothetical protein, at 41,814 to 42,896 GFF2629 GFF2630 - Ligand-binding SRPBCC domain protein family, at 42,998 to 43,288 GFF2630 GFF2631 - Transcriptional regulator, ArsR family, at 43,348 to 43,809 GFF2631 GFF2632 - no description, at 43,842 to 44,387 GFF2632 Position (kb) 41 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 40.836 kb on - strand, within GFF2627at 40.862 kb on + strand, within GFF2627at 40.955 kb on + strand, within GFF2627at 40.955 kb on + strand, within GFF2627at 40.956 kb on - strand, within GFF2627at 40.956 kb on - strand, within GFF2627at 41.081 kb on + strand, within GFF2627at 41.081 kb on + strand, within GFF2627at 41.196 kb on - strand, within GFF2627at 41.243 kb on + strand, within GFF2627at 41.244 kb on - strand, within GFF2627at 41.312 kb on + strand, within GFF2627at 41.312 kb on + strand, within GFF2627at 41.313 kb on - strand, within GFF2627at 41.313 kb on - strand, within GFF2627at 41.537 kb on - strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.786 kb on + strandat 41.786 kb on + strandat 41.787 kb on - strandat 41.787 kb on - strandat 41.816 kb on - strandat 41.816 kb on - strandat 41.816 kb on - strandat 41.816 kb on - strandat 41.816 kb on - strandat 41.816 kb on - strandat 41.816 kb on - strandat 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.108 kb on + strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.124 kb on - strand, within GFF2629at 42.327 kb on + strand, within GFF2629at 42.327 kb on + strand, within GFF2629at 42.327 kb on + strand, within GFF2629at 42.328 kb on - strand, within GFF2629at 42.328 kb on - strand, within GFF2629at 42.328 kb on - strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.459 kb on + strand, within GFF2629at 42.459 kb on + strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.466 kb on - strand, within GFF2629at 42.489 kb on + strand, within GFF2629at 42.521 kb on - strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.587 kb on + strand, within GFF2629at 42.655 kb on + strand, within GFF2629at 42.655 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.930 kb on + strandat 42.930 kb on + strandat 42.930 kb on + strandat 42.931 kb on - strandat 42.976 kb on + strandat 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.456 kb on + strand, within GFF2631at 43.456 kb on + strand, within GFF2631at 43.457 kb on - strand, within GFF2631at 43.481 kb on + strand, within GFF2631at 43.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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40,836 - GFF2627 0.38 -1.2
40,862 + GFF2627 0.40 -3.1
40,955 + GFF2627 0.48 -1.6
40,955 + GFF2627 0.48 -2.4
40,956 - GFF2627 0.49 -0.9
40,956 - GFF2627 0.49 -0.5
41,081 + GFF2627 0.60 -0.3
41,081 + GFF2627 0.60 -2.7
41,196 - GFF2627 0.70 -1.1
41,243 + GFF2627 0.74 +0.5
41,244 - GFF2627 0.75 -1.3
41,312 + GFF2627 0.81 +0.5
41,312 + GFF2627 0.81 -2.3
41,313 - GFF2627 0.81 -1.3
41,313 - GFF2627 0.81 -1.3
41,537 - -0.7
41,542 + +1.1
41,542 + +0.8
41,542 + -1.6
41,542 + +0.1
41,543 - -0.6
41,543 - -0.0
41,786 + +0.5
41,786 + +0.6
41,787 - -1.4
41,787 - +0.2
41,816 - -0.1
41,816 - +0.3
41,816 - -0.0
41,816 - -0.2
41,816 - -0.5
41,816 - -0.5
41,816 - -1.4
42,081 + GFF2629 0.25 -0.3
42,081 + GFF2629 0.25 -1.1
42,081 + GFF2629 0.25 -0.5
42,081 + GFF2629 0.25 +0.3
42,081 + GFF2629 0.25 -1.7
42,081 + GFF2629 0.25 +0.1
42,081 + GFF2629 0.25 -0.4
42,081 + GFF2629 0.25 +0.3
42,081 + GFF2629 0.25 -0.2
42,082 - GFF2629 0.25 +1.3
42,082 - GFF2629 0.25 -0.9
42,082 - GFF2629 0.25 +0.2
42,082 - GFF2629 0.25 +0.7
42,082 - GFF2629 0.25 +0.3
42,082 - GFF2629 0.25 -0.7
42,082 - GFF2629 0.25 -0.3
42,108 + GFF2629 0.27 -0.2
42,109 - GFF2629 0.27 +0.3
42,109 - GFF2629 0.27 -1.0
42,109 - GFF2629 0.27 -0.2
42,109 - GFF2629 0.27 -0.3
42,119 + GFF2629 0.28 -0.2
42,119 + GFF2629 0.28 -1.5
42,119 + GFF2629 0.28 +0.5
42,119 + GFF2629 0.28 -1.3
42,120 - GFF2629 0.28 +0.3
42,120 - GFF2629 0.28 +1.5
42,120 - GFF2629 0.28 +0.5
42,120 - GFF2629 0.28 -0.0
42,120 - GFF2629 0.28 -0.9
42,120 - GFF2629 0.28 -0.3
42,123 + GFF2629 0.29 +0.5
42,123 + GFF2629 0.29 -0.4
42,123 + GFF2629 0.29 -0.7
42,123 + GFF2629 0.29 +0.5
42,123 + GFF2629 0.29 +0.1
42,123 + GFF2629 0.29 -0.1
42,124 - GFF2629 0.29 +0.7
42,327 + GFF2629 0.47 -0.4
42,327 + GFF2629 0.47 -0.5
42,327 + GFF2629 0.47 +0.9
42,328 - GFF2629 0.47 -0.1
42,328 - GFF2629 0.47 -1.3
42,328 - GFF2629 0.47 +1.0
42,353 + GFF2629 0.50 -0.5
42,353 + GFF2629 0.50 +1.1
42,353 + GFF2629 0.50 -0.6
42,353 + GFF2629 0.50 +0.8
42,353 + GFF2629 0.50 -0.3
42,353 + GFF2629 0.50 -0.3
42,354 - GFF2629 0.50 -0.0
42,354 - GFF2629 0.50 +0.1
42,354 - GFF2629 0.50 +0.6
42,459 + GFF2629 0.60 -0.1
42,459 + GFF2629 0.60 -1.5
42,460 - GFF2629 0.60 -0.0
42,460 - GFF2629 0.60 -0.7
42,460 - GFF2629 0.60 +0.1
42,466 - GFF2629 0.60 -0.3
42,489 + GFF2629 0.62 -0.5
42,521 - GFF2629 0.65 -0.7
42,550 + GFF2629 0.68 +0.9
42,550 + GFF2629 0.68 +0.7
42,550 + GFF2629 0.68 +0.7
42,550 + GFF2629 0.68 +0.3
42,550 + GFF2629 0.68 -0.2
42,550 + GFF2629 0.68 -0.0
42,550 + GFF2629 0.68 +0.7
42,551 - GFF2629 0.68 -0.3
42,551 - GFF2629 0.68 -0.9
42,551 - GFF2629 0.68 -0.4
42,551 - GFF2629 0.68 -0.1
42,551 - GFF2629 0.68 +0.2
42,587 + GFF2629 0.71 +0.4
42,655 + GFF2629 0.78 +1.5
42,655 + GFF2629 0.78 -0.9
42,735 + GFF2629 0.85 -0.5
42,735 + GFF2629 0.85 -0.4
42,735 + GFF2629 0.85 +0.3
42,736 - GFF2629 0.85 -0.0
42,736 - GFF2629 0.85 +0.4
42,736 - GFF2629 0.85 +0.1
42,736 - GFF2629 0.85 -0.0
42,736 - GFF2629 0.85 -0.2
42,736 - GFF2629 0.85 -0.1
42,736 - GFF2629 0.85 -0.3
42,736 - GFF2629 0.85 -0.5
42,930 + -1.6
42,930 + +0.1
42,930 + +0.0
42,931 - -0.3
42,976 + +0.5
43,221 + GFF2630 0.77 -0.6
43,221 + GFF2630 0.77 -1.1
43,221 + GFF2630 0.77 -0.6
43,221 + GFF2630 0.77 +1.7
43,221 + GFF2630 0.77 +0.5
43,222 - GFF2630 0.77 -0.1
43,222 - GFF2630 0.77 -1.5
43,222 - GFF2630 0.77 +0.9
43,456 + GFF2631 0.23 +2.1
43,456 + GFF2631 0.23 -0.8
43,457 - GFF2631 0.24 -0.0
43,481 + GFF2631 0.29 +0.6
43,820 - -0.4

Or see this region's nucleotide sequence