Strain Fitness in Variovorax sp. SCN45 around GFF2440

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2439 and GFF2440 are separated by 19 nucleotidesGFF2440 and GFF2441 are separated by 143 nucleotides GFF2439 - no description, at 490,900 to 491,910 GFF2439 GFF2440 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 491,930 to 492,406 GFF2440 GFF2441 - RND efflux system, inner membrane transporter, at 492,550 to 495,678 GFF2441 Position (kb) 491 492 493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 491.006 kb on + strand, within GFF2439at 491.006 kb on + strand, within GFF2439at 491.006 kb on + strand, within GFF2439at 491.006 kb on + strand, within GFF2439at 491.072 kb on + strand, within GFF2439at 491.072 kb on + strand, within GFF2439at 491.072 kb on + strand, within GFF2439at 491.073 kb on - strand, within GFF2439at 491.314 kb on + strand, within GFF2439at 491.314 kb on + strand, within GFF2439at 491.315 kb on - strand, within GFF2439at 491.444 kb on + strand, within GFF2439at 491.549 kb on + strand, within GFF2439at 491.567 kb on + strand, within GFF2439at 491.567 kb on + strand, within GFF2439at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.252 kb on + strand, within GFF2440at 492.253 kb on - strand, within GFF2440at 492.253 kb on - strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.374 kb on - strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.391 kb on - strandat 492.391 kb on - strandat 492.391 kb on - strandat 492.391 kb on - strandat 492.393 kb on + strandat 492.393 kb on + strandat 492.393 kb on + strandat 492.393 kb on + strandat 492.394 kb on - strandat 492.409 kb on + strandat 492.409 kb on + strandat 492.410 kb on - strandat 492.410 kb on - strandat 492.491 kb on - strandat 492.503 kb on + strandat 492.503 kb on + strandat 492.504 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.530 kb on + strandat 492.530 kb on + strandat 492.530 kb on + strandat 492.531 kb on - strandat 492.531 kb on - strandat 492.531 kb on - strandat 492.531 kb on - strandat 492.617 kb on + strandat 492.617 kb on + strandat 492.617 kb on + strandat 492.618 kb on - strandat 492.618 kb on - strandat 492.618 kb on - strandat 492.618 kb on - strandat 492.914 kb on + strand, within GFF2441at 492.914 kb on + strand, within GFF2441at 492.914 kb on + strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 493.016 kb on + strand, within GFF2441at 493.016 kb on + strand, within GFF2441at 493.017 kb on - strand, within GFF2441at 493.017 kb on - strand, within GFF2441at 493.017 kb on - strand, within GFF2441at 493.101 kb on - strand, within GFF2441at 493.232 kb on + strand, within GFF2441at 493.233 kb on - strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.375 kb on + strand, within GFF2441at 493.375 kb on + strand, within GFF2441at 493.375 kb on + strand, within GFF2441

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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491,006 + GFF2439 0.10 -0.2
491,006 + GFF2439 0.10 -0.1
491,006 + GFF2439 0.10 +0.1
491,006 + GFF2439 0.10 -4.0
491,072 + GFF2439 0.17 -0.0
491,072 + GFF2439 0.17 +0.4
491,072 + GFF2439 0.17 -0.6
491,073 - GFF2439 0.17 -0.3
491,314 + GFF2439 0.41 -1.2
491,314 + GFF2439 0.41 -0.0
491,315 - GFF2439 0.41 -0.2
491,444 + GFF2439 0.54 -0.3
491,549 + GFF2439 0.64 -0.9
491,567 + GFF2439 0.66 +1.2
491,567 + GFF2439 0.66 -0.2
492,033 + GFF2440 0.22 +0.2
492,033 + GFF2440 0.22 -0.1
492,033 + GFF2440 0.22 -0.4
492,033 + GFF2440 0.22 -1.1
492,033 + GFF2440 0.22 -0.0
492,034 - GFF2440 0.22 -2.0
492,034 - GFF2440 0.22 +0.0
492,034 - GFF2440 0.22 +0.4
492,034 - GFF2440 0.22 -1.2
492,034 - GFF2440 0.22 -0.3
492,252 + GFF2440 0.68 +0.1
492,253 - GFF2440 0.68 +0.1
492,253 - GFF2440 0.68 +0.8
492,315 + GFF2440 0.81 -0.3
492,315 + GFF2440 0.81 -0.1
492,315 + GFF2440 0.81 -1.1
492,315 + GFF2440 0.81 +0.9
492,316 - GFF2440 0.81 -0.8
492,316 - GFF2440 0.81 -0.3
492,316 - GFF2440 0.81 -1.0
492,316 - GFF2440 0.81 -0.9
492,316 - GFF2440 0.81 -0.3
492,316 - GFF2440 0.81 -0.9
492,374 - -1.0
492,390 + +0.3
492,390 + +0.7
492,390 + +0.2
492,390 + +0.6
492,390 + -0.7
492,390 + -0.1
492,390 + +0.0
492,390 + -0.7
492,391 - -0.5
492,391 - -0.1
492,391 - +0.6
492,391 - -0.3
492,393 + +0.8
492,393 + +0.9
492,393 + -1.6
492,393 + +0.1
492,394 - +0.2
492,409 + +0.3
492,409 + +0.4
492,410 - +0.8
492,410 - +0.0
492,491 - +0.4
492,503 + -1.0
492,503 + -0.1
492,504 - -0.1
492,508 - -0.2
492,508 - +1.9
492,508 - -0.5
492,508 - +0.2
492,508 - +0.0
492,508 - -1.0
492,508 - +0.2
492,508 - +0.1
492,508 - -0.2
492,530 + -0.4
492,530 + -0.4
492,530 + +0.0
492,531 - +0.0
492,531 - +0.6
492,531 - -0.2
492,531 - -1.9
492,617 + -0.7
492,617 + -0.3
492,617 + -0.6
492,618 - -0.3
492,618 - -0.7
492,618 - -0.5
492,618 - -0.1
492,914 + GFF2441 0.12 -0.4
492,914 + GFF2441 0.12 -0.6
492,914 + GFF2441 0.12 +0.2
492,915 - GFF2441 0.12 -0.2
492,915 - GFF2441 0.12 -0.3
492,915 - GFF2441 0.12 -1.6
492,915 - GFF2441 0.12 -0.5
492,915 - GFF2441 0.12 -0.2
493,016 + GFF2441 0.15 -1.0
493,016 + GFF2441 0.15 +1.6
493,017 - GFF2441 0.15 -0.3
493,017 - GFF2441 0.15 -0.5
493,017 - GFF2441 0.15 +0.8
493,101 - GFF2441 0.18 +0.8
493,232 + GFF2441 0.22 +0.9
493,233 - GFF2441 0.22 +0.0
493,373 + GFF2441 0.26 +0.2
493,373 + GFF2441 0.26 +0.9
493,373 + GFF2441 0.26 -0.1
493,373 + GFF2441 0.26 +0.8
493,374 - GFF2441 0.26 -0.0
493,374 - GFF2441 0.26 +0.4
493,374 - GFF2441 0.26 +0.3
493,374 - GFF2441 0.26 -1.1
493,374 - GFF2441 0.26 -1.0
493,374 - GFF2441 0.26 +0.2
493,375 + GFF2441 0.26 +1.3
493,375 + GFF2441 0.26 -0.7
493,375 + GFF2441 0.26 -1.0

Or see this region's nucleotide sequence