Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2330 and GFF2331 are separated by 39 nucleotides GFF2331 and GFF2332 are separated by 111 nucleotides
GFF2330 - FOG: TPR repeat, at 380,934 to 382,289
GFF2330
GFF2331 - Tautomerase / Tautomerase, at 382,329 to 382,727
GFF2331
GFF2332 - Transcriptional regulator, LysR family, at 382,839 to 383,699
GFF2332
Position (kb) 382
383 Strain fitness (log2 ratio) -1
0
1 at 381.341 kb on - strand, within GFF2330 at 381.341 kb on - strand, within GFF2330 at 381.346 kb on + strand, within GFF2330 at 381.346 kb on + strand, within GFF2330 at 381.346 kb on + strand, within GFF2330 at 381.347 kb on - strand, within GFF2330 at 381.347 kb on - strand, within GFF2330 at 381.347 kb on - strand, within GFF2330 at 381.398 kb on - strand, within GFF2330 at 381.490 kb on + strand, within GFF2330 at 381.490 kb on + strand, within GFF2330 at 381.491 kb on - strand, within GFF2330 at 381.491 kb on - strand, within GFF2330 at 381.523 kb on + strand, within GFF2330 at 381.523 kb on + strand, within GFF2330 at 381.781 kb on + strand, within GFF2330 at 381.808 kb on + strand, within GFF2330 at 381.808 kb on + strand, within GFF2330 at 381.809 kb on - strand, within GFF2330 at 381.809 kb on - strand, within GFF2330 at 381.809 kb on - strand, within GFF2330 at 382.004 kb on - strand, within GFF2330 at 382.117 kb on + strand, within GFF2330 at 382.118 kb on - strand, within GFF2330 at 382.381 kb on + strand, within GFF2331 at 382.382 kb on - strand, within GFF2331 at 382.382 kb on - strand, within GFF2331 at 382.414 kb on + strand, within GFF2331 at 382.414 kb on + strand, within GFF2331 at 382.414 kb on + strand, within GFF2331 at 382.415 kb on - strand, within GFF2331 at 382.415 kb on - strand, within GFF2331 at 382.415 kb on - strand, within GFF2331 at 382.415 kb on - strand, within GFF2331 at 382.475 kb on - strand, within GFF2331 at 382.594 kb on + strand, within GFF2331 at 382.594 kb on + strand, within GFF2331 at 382.594 kb on + strand, within GFF2331 at 382.595 kb on - strand, within GFF2331 at 382.741 kb on - strand at 382.802 kb on + strand at 383.140 kb on - strand, within GFF2332 at 383.466 kb on + strand, within GFF2332 at 383.533 kb on + strand, within GFF2332 at 383.533 kb on + strand, within GFF2332 at 383.534 kb on - strand, within GFF2332 at 383.534 kb on - strand, within GFF2332
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 381,341 - GFF2330 0.30 -1.3 381,341 - GFF2330 0.30 -0.1 381,346 + GFF2330 0.30 +0.0 381,346 + GFF2330 0.30 -1.1 381,346 + GFF2330 0.30 -0.2 381,347 - GFF2330 0.30 -1.0 381,347 - GFF2330 0.30 -0.8 381,347 - GFF2330 0.30 -0.1 381,398 - GFF2330 0.34 -0.0 381,490 + GFF2330 0.41 +0.5 381,490 + GFF2330 0.41 +0.1 381,491 - GFF2330 0.41 -0.1 381,491 - GFF2330 0.41 -0.0 381,523 + GFF2330 0.43 -0.3 381,523 + GFF2330 0.43 -0.4 381,781 + GFF2330 0.62 -0.2 381,808 + GFF2330 0.64 -0.4 381,808 + GFF2330 0.64 -0.2 381,809 - GFF2330 0.65 -1.2 381,809 - GFF2330 0.65 -0.4 381,809 - GFF2330 0.65 +0.4 382,004 - GFF2330 0.79 -0.6 382,117 + GFF2330 0.87 -0.1 382,118 - GFF2330 0.87 -0.4 382,381 + GFF2331 0.13 -0.7 382,382 - GFF2331 0.13 -0.1 382,382 - GFF2331 0.13 -1.3 382,414 + GFF2331 0.21 -0.6 382,414 + GFF2331 0.21 +0.0 382,414 + GFF2331 0.21 -0.3 382,415 - GFF2331 0.22 +0.0 382,415 - GFF2331 0.22 -1.0 382,415 - GFF2331 0.22 -0.6 382,415 - GFF2331 0.22 +0.3 382,475 - GFF2331 0.37 -0.7 382,594 + GFF2331 0.66 -0.3 382,594 + GFF2331 0.66 -0.0 382,594 + GFF2331 0.66 -0.6 382,595 - GFF2331 0.67 -0.3 382,741 - -0.2 382,802 + +0.8 383,140 - GFF2332 0.35 +0.7 383,466 + GFF2332 0.73 +0.3 383,533 + GFF2332 0.81 -0.2 383,533 + GFF2332 0.81 +0.1 383,534 - GFF2332 0.81 +0.3 383,534 - GFF2332 0.81 -0.2
Or see this region's nucleotide sequence