Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2184 and GFF2185 are separated by 25 nucleotides GFF2185 and GFF2186 are separated by 34 nucleotides GFF2186 and GFF2187 are separated by 4 nucleotides GFF2187 and GFF2188 are separated by 160 nucleotides GFF2188 and GFF2189 are separated by 68 nucleotides
GFF2184 - VWA containing CoxE family protein, at 241,546 to 242,733
GFF2184
GFF2185 - Acetyltransferase, GNAT family, at 242,759 to 243,346
GFF2185
GFF2186 - no description, at 243,381 to 243,626
GFF2186
GFF2187 - ATPase associated with various cellular activities, AAA_5, at 243,631 to 244,485
GFF2187
GFF2188 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 244,646 to 245,338
GFF2188
GFF2189 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 245,407 to 246,015
GFF2189
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 242.672 kb on + strand at 242.672 kb on + strand at 242.672 kb on + strand at 242.673 kb on - strand at 242.673 kb on - strand at 242.673 kb on - strand at 242.673 kb on - strand at 242.714 kb on + strand at 242.715 kb on - strand at 242.785 kb on - strand at 242.785 kb on - strand at 242.832 kb on + strand, within GFF2185 at 242.832 kb on + strand, within GFF2185 at 242.833 kb on - strand, within GFF2185 at 243.051 kb on + strand, within GFF2185 at 243.051 kb on + strand, within GFF2185 at 243.051 kb on + strand, within GFF2185 at 243.051 kb on + strand, within GFF2185 at 243.052 kb on - strand, within GFF2185 at 243.190 kb on - strand, within GFF2185 at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.373 kb on + strand at 243.374 kb on - strand at 243.400 kb on + strand at 243.413 kb on - strand, within GFF2186 at 243.413 kb on - strand, within GFF2186 at 243.413 kb on - strand, within GFF2186 at 243.490 kb on + strand, within GFF2186 at 243.491 kb on - strand, within GFF2186 at 243.848 kb on + strand, within GFF2187 at 243.848 kb on + strand, within GFF2187 at 243.849 kb on - strand, within GFF2187 at 243.947 kb on + strand, within GFF2187 at 243.947 kb on + strand, within GFF2187 at 244.055 kb on + strand, within GFF2187 at 244.055 kb on + strand, within GFF2187 at 244.055 kb on + strand, within GFF2187 at 244.055 kb on + strand, within GFF2187 at 244.056 kb on - strand, within GFF2187 at 244.056 kb on - strand, within GFF2187 at 244.061 kb on + strand, within GFF2187 at 244.061 kb on + strand, within GFF2187 at 244.061 kb on + strand, within GFF2187 at 244.061 kb on + strand, within GFF2187 at 244.061 kb on + strand, within GFF2187 at 244.062 kb on - strand, within GFF2187 at 244.062 kb on - strand, within GFF2187 at 244.062 kb on - strand, within GFF2187 at 244.062 kb on - strand, within GFF2187 at 244.062 kb on - strand, within GFF2187 at 244.106 kb on + strand, within GFF2187 at 244.193 kb on + strand, within GFF2187 at 244.193 kb on + strand, within GFF2187 at 244.193 kb on + strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.194 kb on - strand, within GFF2187 at 244.271 kb on + strand, within GFF2187 at 244.271 kb on + strand, within GFF2187 at 244.271 kb on + strand, within GFF2187 at 244.272 kb on - strand, within GFF2187 at 244.272 kb on - strand, within GFF2187 at 244.272 kb on - strand, within GFF2187 at 244.277 kb on + strand, within GFF2187 at 244.277 kb on + strand, within GFF2187 at 244.277 kb on + strand, within GFF2187 at 244.278 kb on - strand, within GFF2187 at 244.278 kb on - strand, within GFF2187 at 244.278 kb on - strand, within GFF2187 at 244.278 kb on - strand, within GFF2187 at 244.460 kb on + strand at 244.460 kb on + strand at 244.460 kb on + strand at 244.460 kb on + strand at 244.460 kb on + strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.461 kb on - strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.591 kb on + strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.592 kb on - strand at 244.593 kb on + strand at 244.593 kb on + strand at 244.593 kb on + strand at 244.593 kb on + strand at 244.593 kb on + strand at 244.594 kb on - strand at 244.752 kb on + strand, within GFF2188 at 244.753 kb on - strand, within GFF2188 at 244.753 kb on - strand, within GFF2188 at 244.753 kb on - strand, within GFF2188 at 244.787 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.847 kb on + strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.848 kb on - strand, within GFF2188 at 244.871 kb on + strand, within GFF2188 at 244.871 kb on + strand, within GFF2188 at 244.871 kb on + strand, within GFF2188 at 244.872 kb on - strand, within GFF2188 at 244.872 kb on - strand, within GFF2188 at 244.936 kb on + strand, within GFF2188 at 244.937 kb on - strand, within GFF2188 at 244.955 kb on + strand, within GFF2188 at 244.955 kb on + strand, within GFF2188 at 244.956 kb on - strand, within GFF2188 at 244.956 kb on - strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.958 kb on + strand, within GFF2188 at 244.959 kb on - strand, within GFF2188 at 244.959 kb on - strand, within GFF2188 at 244.959 kb on - strand, within GFF2188 at 244.959 kb on - strand, within GFF2188 at 245.141 kb on + strand, within GFF2188 at 245.141 kb on + strand, within GFF2188 at 245.142 kb on - strand, within GFF2188 at 245.142 kb on - strand, within GFF2188 at 245.142 kb on - strand, within GFF2188 at 245.142 kb on - strand, within GFF2188 at 245.165 kb on + strand, within GFF2188 at 245.165 kb on + strand, within GFF2188 at 245.166 kb on - strand, within GFF2188 at 245.166 kb on - strand, within GFF2188 at 245.270 kb on + strand at 245.270 kb on + strand at 245.270 kb on + strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.271 kb on - strand at 245.336 kb on + strand at 245.337 kb on - strand at 245.462 kb on + strand at 245.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 242,672 + -0.5 242,672 + -1.8 242,672 + +0.4 242,673 - +1.3 242,673 - -0.4 242,673 - +0.1 242,673 - +0.6 242,714 + +0.0 242,715 - +0.0 242,785 - +0.0 242,785 - -1.0 242,832 + GFF2185 0.12 -0.3 242,832 + GFF2185 0.12 +1.6 242,833 - GFF2185 0.13 +0.0 243,051 + GFF2185 0.50 -0.1 243,051 + GFF2185 0.50 -1.6 243,051 + GFF2185 0.50 -0.3 243,051 + GFF2185 0.50 -0.4 243,052 - GFF2185 0.50 -1.5 243,190 - GFF2185 0.73 -0.0 243,373 + +0.2 243,373 + -0.5 243,373 + +0.8 243,373 + +0.0 243,373 + -0.2 243,373 + +0.4 243,373 + -0.4 243,373 + +0.7 243,373 + +0.1 243,373 + -0.9 243,373 + -0.3 243,374 - +0.6 243,400 + +0.1 243,413 - GFF2186 0.13 +0.9 243,413 - GFF2186 0.13 -0.0 243,413 - GFF2186 0.13 -0.2 243,490 + GFF2186 0.44 +1.1 243,491 - GFF2186 0.45 +1.1 243,848 + GFF2187 0.25 +0.2 243,848 + GFF2187 0.25 -0.8 243,849 - GFF2187 0.25 -0.4 243,947 + GFF2187 0.37 +0.0 243,947 + GFF2187 0.37 +1.6 244,055 + GFF2187 0.50 -0.2 244,055 + GFF2187 0.50 +0.2 244,055 + GFF2187 0.50 +0.0 244,055 + GFF2187 0.50 -1.5 244,056 - GFF2187 0.50 +1.1 244,056 - GFF2187 0.50 +0.0 244,061 + GFF2187 0.50 -0.7 244,061 + GFF2187 0.50 -1.3 244,061 + GFF2187 0.50 +0.6 244,061 + GFF2187 0.50 -0.3 244,061 + GFF2187 0.50 -1.2 244,062 - GFF2187 0.50 +0.0 244,062 - GFF2187 0.50 -1.1 244,062 - GFF2187 0.50 -0.3 244,062 - GFF2187 0.50 +0.1 244,062 - GFF2187 0.50 +0.4 244,106 + GFF2187 0.56 +0.9 244,193 + GFF2187 0.66 -0.6 244,193 + GFF2187 0.66 +1.2 244,193 + GFF2187 0.66 +0.3 244,194 - GFF2187 0.66 -1.5 244,194 - GFF2187 0.66 +1.6 244,194 - GFF2187 0.66 +0.6 244,194 - GFF2187 0.66 -0.1 244,194 - GFF2187 0.66 -0.3 244,194 - GFF2187 0.66 +0.6 244,194 - GFF2187 0.66 +0.0 244,194 - GFF2187 0.66 -0.6 244,194 - GFF2187 0.66 -0.2 244,194 - GFF2187 0.66 +0.2 244,271 + GFF2187 0.75 -0.1 244,271 + GFF2187 0.75 +0.0 244,271 + GFF2187 0.75 -1.5 244,272 - GFF2187 0.75 +0.1 244,272 - GFF2187 0.75 -0.1 244,272 - GFF2187 0.75 +0.1 244,277 + GFF2187 0.76 -0.3 244,277 + GFF2187 0.76 +0.6 244,277 + GFF2187 0.76 +0.2 244,278 - GFF2187 0.76 -0.5 244,278 - GFF2187 0.76 +0.2 244,278 - GFF2187 0.76 +0.4 244,278 - GFF2187 0.76 -0.1 244,460 + +1.2 244,460 + +0.1 244,460 + -0.4 244,460 + -1.2 244,460 + +0.5 244,461 - +0.3 244,461 - -0.1 244,461 - -0.1 244,461 - -0.3 244,461 - -0.2 244,461 - -0.7 244,461 - -1.0 244,461 - -0.5 244,461 - +0.4 244,591 + -0.4 244,591 + -0.4 244,591 + -0.6 244,591 + -0.1 244,591 + +0.3 244,591 + -0.6 244,591 + +0.1 244,591 + -0.3 244,591 + -0.9 244,592 - +0.0 244,592 - -0.3 244,592 - -2.1 244,592 - -0.7 244,592 - -0.2 244,592 - -0.8 244,592 - -0.1 244,592 - -0.2 244,593 + +0.5 244,593 + +1.2 244,593 + -0.4 244,593 + -0.5 244,593 + -0.2 244,594 - +0.1 244,752 + GFF2188 0.15 -1.3 244,753 - GFF2188 0.15 -0.4 244,753 - GFF2188 0.15 -0.4 244,753 - GFF2188 0.15 +0.2 244,787 + GFF2188 0.20 -0.2 244,847 + GFF2188 0.29 -1.7 244,847 + GFF2188 0.29 +0.3 244,847 + GFF2188 0.29 -0.1 244,847 + GFF2188 0.29 +0.4 244,847 + GFF2188 0.29 +0.4 244,847 + GFF2188 0.29 -0.1 244,847 + GFF2188 0.29 +0.4 244,847 + GFF2188 0.29 -1.6 244,847 + GFF2188 0.29 -0.5 244,848 - GFF2188 0.29 -0.7 244,848 - GFF2188 0.29 -0.9 244,848 - GFF2188 0.29 -0.1 244,848 - GFF2188 0.29 +0.1 244,848 - GFF2188 0.29 -0.7 244,848 - GFF2188 0.29 +0.6 244,848 - GFF2188 0.29 -0.9 244,848 - GFF2188 0.29 -0.7 244,848 - GFF2188 0.29 -0.0 244,848 - GFF2188 0.29 +1.0 244,848 - GFF2188 0.29 +2.6 244,848 - GFF2188 0.29 -0.4 244,848 - GFF2188 0.29 -0.0 244,871 + GFF2188 0.32 +0.1 244,871 + GFF2188 0.32 +0.3 244,871 + GFF2188 0.32 +1.2 244,872 - GFF2188 0.33 -0.8 244,872 - GFF2188 0.33 -0.3 244,936 + GFF2188 0.42 -0.6 244,937 - GFF2188 0.42 -0.3 244,955 + GFF2188 0.45 -0.9 244,955 + GFF2188 0.45 -0.4 244,956 - GFF2188 0.45 -0.8 244,956 - GFF2188 0.45 +0.5 244,958 + GFF2188 0.45 +1.2 244,958 + GFF2188 0.45 +0.3 244,958 + GFF2188 0.45 -0.2 244,958 + GFF2188 0.45 -0.6 244,958 + GFF2188 0.45 -2.4 244,958 + GFF2188 0.45 -0.2 244,958 + GFF2188 0.45 +0.1 244,958 + GFF2188 0.45 +0.8 244,958 + GFF2188 0.45 -0.1 244,959 - GFF2188 0.45 -0.1 244,959 - GFF2188 0.45 +0.2 244,959 - GFF2188 0.45 -0.3 244,959 - GFF2188 0.45 +0.2 245,141 + GFF2188 0.71 -0.8 245,141 + GFF2188 0.71 +2.2 245,142 - GFF2188 0.72 +0.3 245,142 - GFF2188 0.72 -0.5 245,142 - GFF2188 0.72 -0.9 245,142 - GFF2188 0.72 -0.4 245,165 + GFF2188 0.75 -0.5 245,165 + GFF2188 0.75 -0.0 245,166 - GFF2188 0.75 -0.3 245,166 - GFF2188 0.75 +0.5 245,270 + -1.3 245,270 + +0.6 245,270 + +0.1 245,271 - -0.4 245,271 - -0.0 245,271 - +0.3 245,271 - -0.4 245,271 - -0.3 245,271 - +1.0 245,271 - -0.8 245,271 - -0.7 245,271 - +0.3 245,271 - +0.5 245,336 + +0.4 245,337 - -0.3 245,462 + -0.2 245,463 - -0.2
Or see this region's nucleotide sequence