Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1919 and GFF1920 overlap by 4 nucleotides GFF1920 and GFF1921 overlap by 4 nucleotides GFF1921 and GFF1922 overlap by 4 nucleotides
GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475
GFF1919
GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077
GFF1920
GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063
GFF1921
GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304
GFF1922
Position (kb) 601
602
603 Strain fitness (log2 ratio) -1
0
1
2 at 600.207 kb on + strand, within GFF1919 at 600.271 kb on - strand, within GFF1919 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.581 kb on + strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.582 kb on - strand, within GFF1920 at 600.585 kb on + strand, within GFF1920 at 600.585 kb on + strand, within GFF1920 at 600.585 kb on + strand, within GFF1920 at 600.586 kb on - strand, within GFF1920 at 600.586 kb on - strand, within GFF1920 at 600.586 kb on - strand, within GFF1920 at 600.779 kb on + strand, within GFF1920 at 600.780 kb on - strand, within GFF1920 at 600.914 kb on + strand, within GFF1920 at 601.274 kb on - strand, within GFF1921 at 601.285 kb on + strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.468 kb on + strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.862 kb on - strand, within GFF1921 at 602.131 kb on + strand at 602.131 kb on + strand at 602.131 kb on + strand at 602.132 kb on - strand at 602.132 kb on - strand at 602.257 kb on - strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.788 kb on - strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 600,207 + GFF1919 0.84 +1.0 600,271 - GFF1919 0.88 +0.1 600,581 + GFF1920 0.18 +0.5 600,581 + GFF1920 0.18 +0.1 600,581 + GFF1920 0.18 +0.5 600,581 + GFF1920 0.18 -0.1 600,581 + GFF1920 0.18 +0.2 600,582 - GFF1920 0.18 -0.9 600,582 - GFF1920 0.18 -0.1 600,582 - GFF1920 0.18 -0.9 600,582 - GFF1920 0.18 +0.7 600,585 + GFF1920 0.19 -0.9 600,585 + GFF1920 0.19 -0.1 600,585 + GFF1920 0.19 -0.7 600,586 - GFF1920 0.19 -0.3 600,586 - GFF1920 0.19 -0.8 600,586 - GFF1920 0.19 +1.4 600,779 + GFF1920 0.51 -0.1 600,780 - GFF1920 0.51 +0.1 600,914 + GFF1920 0.73 -0.1 601,274 - GFF1921 0.20 +1.3 601,285 + GFF1921 0.21 +1.2 601,286 - GFF1921 0.21 -0.9 601,286 - GFF1921 0.21 +0.2 601,468 + GFF1921 0.40 -0.1 601,469 - GFF1921 0.40 -0.9 601,469 - GFF1921 0.40 -0.5 601,469 - GFF1921 0.40 +0.9 601,469 - GFF1921 0.40 -0.2 601,469 - GFF1921 0.40 -0.7 601,472 - GFF1921 0.40 +0.2 601,472 - GFF1921 0.40 -0.3 601,595 - GFF1921 0.53 +2.1 601,595 - GFF1921 0.53 +0.8 601,603 + GFF1921 0.53 +0.1 601,603 + GFF1921 0.53 -0.2 601,603 + GFF1921 0.53 -0.5 601,604 - GFF1921 0.54 -0.7 601,604 - GFF1921 0.54 +0.3 601,862 - GFF1921 0.80 +0.3 602,131 + -0.5 602,131 + -0.2 602,131 + +0.4 602,132 - +1.7 602,132 - -0.5 602,257 - GFF1922 0.16 -0.6 602,478 + GFF1922 0.34 -1.3 602,478 + GFF1922 0.34 -0.1 602,788 - GFF1922 0.58 +0.1 602,994 + GFF1922 0.75 +0.1 602,994 + GFF1922 0.75 +0.3 602,994 + GFF1922 0.75 -0.4 602,995 - GFF1922 0.75 +0.1 602,995 - GFF1922 0.75 +1.4 602,995 - GFF1922 0.75 -0.6 602,995 - GFF1922 0.75 -0.9
Or see this region's nucleotide sequence