Strain Fitness in Variovorax sp. SCN45 around GFF1881

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1880 and GFF1881 overlap by 4 nucleotidesGFF1881 and GFF1882 overlap by 4 nucleotides GFF1880 - Previously called glutamate synthase [NADPH] small chain, at 553,381 to 555,180 GFF1880 GFF1881 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-) / 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-), at 555,177 to 557,003 GFF1881 GFF1882 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-), at 557,000 to 558,055 GFF1882 Position (kb) 555 556 557 558Strain fitness (log2 ratio) -2 -1 0 1 2at 554.356 kb on + strand, within GFF1880at 554.356 kb on + strand, within GFF1880at 554.357 kb on - strand, within GFF1880at 554.659 kb on + strand, within GFF1880at 554.660 kb on - strand, within GFF1880at 554.660 kb on - strand, within GFF1880at 554.722 kb on + strand, within GFF1880at 554.723 kb on - strand, within GFF1880at 554.752 kb on + strand, within GFF1880at 554.752 kb on + strand, within GFF1880at 554.752 kb on + strand, within GFF1880at 554.753 kb on - strand, within GFF1880at 554.753 kb on - strand, within GFF1880at 555.022 kb on + strandat 555.022 kb on + strandat 555.022 kb on + strandat 555.022 kb on + strandat 555.022 kb on + strandat 555.022 kb on + strandat 555.022 kb on + strandat 555.022 kb on + strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.023 kb on - strandat 555.678 kb on + strand, within GFF1881at 555.678 kb on + strand, within GFF1881at 555.678 kb on + strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.679 kb on - strand, within GFF1881at 555.849 kb on + strand, within GFF1881at 555.850 kb on - strand, within GFF1881at 555.850 kb on - strand, within GFF1881at 555.876 kb on + strand, within GFF1881at 555.876 kb on + strand, within GFF1881at 555.921 kb on + strand, within GFF1881at 555.922 kb on - strand, within GFF1881at 555.922 kb on - strand, within GFF1881at 556.101 kb on + strand, within GFF1881at 556.101 kb on + strand, within GFF1881at 556.102 kb on - strand, within GFF1881at 556.203 kb on + strand, within GFF1881at 556.204 kb on - strand, within GFF1881at 556.392 kb on + strand, within GFF1881at 556.393 kb on - strand, within GFF1881at 556.393 kb on - strand, within GFF1881at 556.453 kb on - strand, within GFF1881at 556.453 kb on - strand, within GFF1881at 556.521 kb on + strand, within GFF1881at 556.521 kb on + strand, within GFF1881at 556.521 kb on + strand, within GFF1881at 556.522 kb on - strand, within GFF1881at 556.522 kb on - strand, within GFF1881at 556.551 kb on + strand, within GFF1881at 556.552 kb on - strand, within GFF1881at 556.561 kb on - strand, within GFF1881at 556.581 kb on + strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.582 kb on - strand, within GFF1881at 556.587 kb on + strand, within GFF1881at 556.587 kb on + strand, within GFF1881at 556.587 kb on + strand, within GFF1881at 556.588 kb on - strand, within GFF1881at 556.588 kb on - strand, within GFF1881at 556.588 kb on - strand, within GFF1881at 556.689 kb on + strand, within GFF1881at 556.690 kb on - strand, within GFF1881at 557.006 kb on + strandat 557.006 kb on + strandat 557.006 kb on + strandat 557.006 kb on + strandat 557.007 kb on - strandat 557.007 kb on - strandat 557.007 kb on - strandat 557.075 kb on + strandat 557.075 kb on + strandat 557.076 kb on - strandat 557.222 kb on + strand, within GFF1882at 557.223 kb on - strand, within GFF1882at 557.223 kb on - strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.315 kb on + strand, within GFF1882at 557.316 kb on - strand, within GFF1882at 557.316 kb on - strand, within GFF1882at 557.316 kb on - strand, within GFF1882at 557.402 kb on + strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.403 kb on - strand, within GFF1882at 557.426 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.549 kb on + strand, within GFF1882at 557.550 kb on - strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.690 kb on + strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.691 kb on - strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.876 kb on + strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.877 kb on - strand, within GFF1882at 557.925 kb on - strand, within GFF1882

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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554,356 + GFF1880 0.54 -0.1
554,356 + GFF1880 0.54 -0.5
554,357 - GFF1880 0.54 +0.1
554,659 + GFF1880 0.71 +1.4
554,660 - GFF1880 0.71 -1.5
554,660 - GFF1880 0.71 -0.2
554,722 + GFF1880 0.74 -1.3
554,723 - GFF1880 0.75 +0.3
554,752 + GFF1880 0.76 -0.1
554,752 + GFF1880 0.76 +0.4
554,752 + GFF1880 0.76 +1.2
554,753 - GFF1880 0.76 -0.3
554,753 - GFF1880 0.76 -0.3
555,022 + -0.9
555,022 + +0.9
555,022 + -0.3
555,022 + -1.1
555,022 + -0.4
555,022 + -0.2
555,022 + +0.1
555,022 + +1.0
555,023 - -0.6
555,023 - +1.2
555,023 - +0.2
555,023 - +1.7
555,023 - +0.7
555,023 - +0.1
555,023 - -0.3
555,023 - -0.2
555,023 - +0.2
555,023 - -0.1
555,023 - -1.2
555,678 + GFF1881 0.27 +1.4
555,678 + GFF1881 0.27 +0.7
555,678 + GFF1881 0.27 -0.5
555,679 - GFF1881 0.27 -0.7
555,679 - GFF1881 0.27 +1.7
555,679 - GFF1881 0.27 +1.3
555,679 - GFF1881 0.27 +0.3
555,679 - GFF1881 0.27 +2.1
555,679 - GFF1881 0.27 -1.1
555,679 - GFF1881 0.27 +0.6
555,679 - GFF1881 0.27 -0.1
555,849 + GFF1881 0.37 -0.7
555,850 - GFF1881 0.37 +1.1
555,850 - GFF1881 0.37 -0.5
555,876 + GFF1881 0.38 -0.2
555,876 + GFF1881 0.38 +0.3
555,921 + GFF1881 0.41 -0.5
555,922 - GFF1881 0.41 -1.6
555,922 - GFF1881 0.41 -0.5
556,101 + GFF1881 0.51 -0.0
556,101 + GFF1881 0.51 +0.6
556,102 - GFF1881 0.51 +1.7
556,203 + GFF1881 0.56 +0.3
556,204 - GFF1881 0.56 +1.7
556,392 + GFF1881 0.67 -0.5
556,393 - GFF1881 0.67 +1.1
556,393 - GFF1881 0.67 +0.5
556,453 - GFF1881 0.70 +0.2
556,453 - GFF1881 0.70 -1.9
556,521 + GFF1881 0.74 -0.2
556,521 + GFF1881 0.74 -1.4
556,521 + GFF1881 0.74 +0.3
556,522 - GFF1881 0.74 +0.1
556,522 - GFF1881 0.74 -0.5
556,551 + GFF1881 0.75 +1.5
556,552 - GFF1881 0.75 -0.1
556,561 - GFF1881 0.76 +2.2
556,581 + GFF1881 0.77 -1.5
556,582 - GFF1881 0.77 +0.2
556,582 - GFF1881 0.77 +0.9
556,582 - GFF1881 0.77 -1.3
556,582 - GFF1881 0.77 +0.2
556,587 + GFF1881 0.77 -0.0
556,587 + GFF1881 0.77 -1.5
556,587 + GFF1881 0.77 -1.2
556,588 - GFF1881 0.77 -1.3
556,588 - GFF1881 0.77 -0.1
556,588 - GFF1881 0.77 -0.2
556,689 + GFF1881 0.83 +0.4
556,690 - GFF1881 0.83 +0.8
557,006 + -0.2
557,006 + -0.9
557,006 + +0.8
557,006 + -0.1
557,007 - -1.1
557,007 - +0.8
557,007 - -0.2
557,075 + +0.4
557,075 + +0.4
557,076 - -0.4
557,222 + GFF1882 0.21 +0.9
557,223 - GFF1882 0.21 -0.1
557,223 - GFF1882 0.21 -0.9
557,315 + GFF1882 0.30 -0.3
557,315 + GFF1882 0.30 +0.2
557,315 + GFF1882 0.30 +0.9
557,315 + GFF1882 0.30 -0.0
557,315 + GFF1882 0.30 -0.2
557,316 - GFF1882 0.30 +0.7
557,316 - GFF1882 0.30 -1.9
557,316 - GFF1882 0.30 +0.5
557,402 + GFF1882 0.38 +0.6
557,403 - GFF1882 0.38 +0.2
557,403 - GFF1882 0.38 -0.2
557,403 - GFF1882 0.38 +0.1
557,403 - GFF1882 0.38 +0.3
557,426 + GFF1882 0.40 -0.2
557,549 + GFF1882 0.52 -0.0
557,549 + GFF1882 0.52 -1.3
557,549 + GFF1882 0.52 -0.2
557,549 + GFF1882 0.52 +0.9
557,550 - GFF1882 0.52 +1.2
557,690 + GFF1882 0.65 -0.1
557,690 + GFF1882 0.65 -0.5
557,690 + GFF1882 0.65 +0.7
557,690 + GFF1882 0.65 -0.1
557,690 + GFF1882 0.65 -0.1
557,690 + GFF1882 0.65 -0.1
557,691 - GFF1882 0.65 -0.2
557,691 - GFF1882 0.65 -0.3
557,691 - GFF1882 0.65 +1.0
557,691 - GFF1882 0.65 +0.4
557,876 + GFF1882 0.83 +0.2
557,876 + GFF1882 0.83 -1.2
557,876 + GFF1882 0.83 +0.6
557,876 + GFF1882 0.83 -0.5
557,877 - GFF1882 0.83 +0.0
557,877 - GFF1882 0.83 +0.9
557,877 - GFF1882 0.83 +0.1
557,877 - GFF1882 0.83 +1.9
557,877 - GFF1882 0.83 -0.0
557,877 - GFF1882 0.83 -0.5
557,925 - GFF1882 0.88 -0.6

Or see this region's nucleotide sequence