Strain Fitness in Variovorax sp. SCN45 around GFF1855

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1853 and GFF1854 are separated by 13 nucleotidesGFF1854 and GFF1855 are separated by 160 nucleotidesGFF1855 and GFF1856 are separated by 28 nucleotidesGFF1856 and GFF1857 are separated by 92 nucleotides GFF1853 - no description, at 528,845 to 529,504 GFF1853 GFF1854 - hypothetical protein, at 529,518 to 530,003 GFF1854 GFF1855 - no description, at 530,164 to 531,324 GFF1855 GFF1856 - FIG00636408: hypothetical protein, at 531,353 to 531,745 GFF1856 GFF1857 - FIG00553873: hypothetical protein, at 531,838 to 533,118 GFF1857 Position (kb) 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2 3at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.259 kb on + strand, within GFF1853at 529.259 kb on + strand, within GFF1853at 529.314 kb on - strand, within GFF1853at 529.325 kb on + strand, within GFF1853at 529.334 kb on + strand, within GFF1853at 529.535 kb on + strandat 529.536 kb on - strandat 529.761 kb on + strand, within GFF1854at 529.762 kb on - strand, within GFF1854at 529.762 kb on - strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.922 kb on - strand, within GFF1854at 530.001 kb on + strandat 530.085 kb on + strandat 530.086 kb on - strandat 530.145 kb on - strandat 530.145 kb on - strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.159 kb on - strandat 530.159 kb on - strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.438 kb on - strand, within GFF1855at 530.438 kb on - strand, within GFF1855at 530.875 kb on + strand, within GFF1855at 530.980 kb on + strand, within GFF1855at 530.980 kb on + strand, within GFF1855at 530.981 kb on - strand, within GFF1855at 530.981 kb on - strand, within GFF1855at 531.098 kb on + strand, within GFF1855at 531.098 kb on + strand, within GFF1855at 531.098 kb on + strand, within GFF1855at 531.232 kb on + strandat 531.232 kb on + strandat 531.233 kb on - strandat 531.233 kb on - strandat 531.233 kb on - strandat 531.310 kb on + strandat 531.310 kb on + strandat 531.310 kb on + strandat 531.310 kb on + strandat 531.310 kb on + strandat 531.311 kb on - strandat 531.311 kb on - strandat 531.313 kb on + strandat 531.313 kb on + strandat 531.313 kb on + strandat 531.313 kb on + strandat 531.313 kb on + strandat 531.314 kb on - strandat 531.323 kb on - strandat 531.555 kb on + strand, within GFF1856at 531.555 kb on + strand, within GFF1856at 531.556 kb on - strand, within GFF1856at 531.556 kb on - strand, within GFF1856at 531.556 kb on - strand, within GFF1856at 531.600 kb on + strand, within GFF1856at 531.864 kb on - strandat 531.887 kb on + strandat 531.887 kb on + strandat 531.887 kb on + strandat 531.888 kb on - strandat 531.888 kb on - strandat 531.888 kb on - strandat 531.908 kb on - strandat 531.908 kb on - strandat 532.022 kb on + strand, within GFF1857at 532.022 kb on + strand, within GFF1857at 532.023 kb on - strand, within GFF1857at 532.110 kb on - strand, within GFF1857at 532.110 kb on - strand, within GFF1857at 532.110 kb on - strand, within GFF1857at 532.116 kb on - strand, within GFF1857at 532.250 kb on + strand, within GFF1857at 532.251 kb on - strand, within GFF1857at 532.251 kb on - strand, within GFF1857

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
529,184 + GFF1853 0.51 -0.7
529,184 + GFF1853 0.51 -0.1
529,184 + GFF1853 0.51 +0.4
529,184 + GFF1853 0.51 +1.2
529,185 - GFF1853 0.52 -1.0
529,185 - GFF1853 0.52 -0.1
529,185 - GFF1853 0.52 -0.2
529,185 - GFF1853 0.52 -0.4
529,259 + GFF1853 0.63 -0.7
529,259 + GFF1853 0.63 -0.1
529,314 - GFF1853 0.71 -0.2
529,325 + GFF1853 0.73 +1.7
529,334 + GFF1853 0.74 +0.4
529,535 + +0.0
529,536 - -0.4
529,761 + GFF1854 0.50 +0.1
529,762 - GFF1854 0.50 -0.3
529,762 - GFF1854 0.50 -0.7
529,818 + GFF1854 0.62 +0.1
529,818 + GFF1854 0.62 -0.4
529,818 + GFF1854 0.62 +0.8
529,818 + GFF1854 0.62 +0.4
529,818 + GFF1854 0.62 -0.3
529,818 + GFF1854 0.62 +0.1
529,818 + GFF1854 0.62 +0.2
529,818 + GFF1854 0.62 -0.1
529,818 + GFF1854 0.62 +0.0
529,818 + GFF1854 0.62 -0.2
529,819 - GFF1854 0.62 +0.3
529,819 - GFF1854 0.62 +0.5
529,819 - GFF1854 0.62 +0.2
529,819 - GFF1854 0.62 +0.2
529,819 - GFF1854 0.62 +0.6
529,819 - GFF1854 0.62 -0.3
529,819 - GFF1854 0.62 +0.1
529,821 + GFF1854 0.62 +0.3
529,821 + GFF1854 0.62 -0.1
529,821 + GFF1854 0.62 +1.2
529,821 + GFF1854 0.62 -0.1
529,821 + GFF1854 0.62 +0.1
529,821 + GFF1854 0.62 -0.2
529,821 + GFF1854 0.62 -0.0
529,821 + GFF1854 0.62 -0.0
529,822 - GFF1854 0.63 -0.3
529,822 - GFF1854 0.63 +0.1
529,822 - GFF1854 0.63 -1.2
529,822 - GFF1854 0.63 -2.4
529,822 - GFF1854 0.63 -0.6
529,822 - GFF1854 0.63 -0.1
529,822 - GFF1854 0.63 -0.7
529,822 - GFF1854 0.63 +0.8
529,822 - GFF1854 0.63 +1.1
529,822 - GFF1854 0.63 +1.0
529,822 - GFF1854 0.63 +0.3
529,822 - GFF1854 0.63 -1.3
529,922 - GFF1854 0.83 -0.4
530,001 + +1.3
530,085 + +0.4
530,086 - -0.6
530,145 - +0.7
530,145 - -0.4
530,158 + +1.2
530,158 + +0.3
530,158 + -1.7
530,158 + +0.2
530,158 + +0.7
530,158 + -0.1
530,159 - -0.2
530,159 - -0.2
530,230 + -1.1
530,230 + +0.3
530,230 + -0.0
530,230 + -0.0
530,230 + -1.0
530,230 + -0.6
530,230 + -1.7
530,230 + +0.2
530,230 + -0.7
530,230 + -0.2
530,230 + -0.2
530,230 + +0.5
530,230 + -0.4
530,230 + +0.3
530,230 + +0.9
530,230 + -1.5
530,231 - -0.3
530,231 - +0.1
530,231 - -0.2
530,231 - +0.7
530,231 - +0.1
530,231 - +2.1
530,231 - -0.2
530,231 - +0.2
530,231 - +0.0
530,231 - +0.1
530,231 - -0.1
530,231 - -0.3
530,305 + GFF1855 0.12 +0.7
530,305 + GFF1855 0.12 -0.8
530,305 + GFF1855 0.12 -0.5
530,305 + GFF1855 0.12 -0.2
530,305 + GFF1855 0.12 +0.1
530,305 + GFF1855 0.12 +0.7
530,306 - GFF1855 0.12 +0.7
530,306 - GFF1855 0.12 -0.6
530,306 - GFF1855 0.12 -0.8
530,306 - GFF1855 0.12 -0.1
530,306 - GFF1855 0.12 +0.2
530,306 - GFF1855 0.12 +0.1
530,306 - GFF1855 0.12 +0.5
530,306 - GFF1855 0.12 +0.8
530,306 - GFF1855 0.12 -0.0
530,306 - GFF1855 0.12 +0.6
530,437 + GFF1855 0.24 +0.2
530,437 + GFF1855 0.24 +0.7
530,437 + GFF1855 0.24 -0.9
530,437 + GFF1855 0.24 -0.1
530,438 - GFF1855 0.24 -0.0
530,438 - GFF1855 0.24 +0.6
530,875 + GFF1855 0.61 +1.1
530,980 + GFF1855 0.70 -0.7
530,980 + GFF1855 0.70 +0.1
530,981 - GFF1855 0.70 -0.2
530,981 - GFF1855 0.70 +3.7
531,098 + GFF1855 0.80 -0.1
531,098 + GFF1855 0.80 +0.9
531,098 + GFF1855 0.80 -0.4
531,232 + +0.1
531,232 + -0.1
531,233 - -0.3
531,233 - +0.7
531,233 - +0.2
531,310 + -0.4
531,310 + +0.3
531,310 + -0.9
531,310 + -0.1
531,310 + -0.6
531,311 - -0.4
531,311 - -0.9
531,313 + +2.1
531,313 + -0.8
531,313 + -1.3
531,313 + +0.1
531,313 + +1.0
531,314 - -0.3
531,323 - -0.3
531,555 + GFF1856 0.51 -0.7
531,555 + GFF1856 0.51 +0.3
531,556 - GFF1856 0.52 -0.0
531,556 - GFF1856 0.52 +0.6
531,556 - GFF1856 0.52 -0.3
531,600 + GFF1856 0.63 -0.0
531,864 - -0.6
531,887 + +0.1
531,887 + -0.1
531,887 + -0.8
531,888 - -0.4
531,888 - -0.4
531,888 - -0.0
531,908 - +0.4
531,908 - -0.7
532,022 + GFF1857 0.14 -0.6
532,022 + GFF1857 0.14 -0.4
532,023 - GFF1857 0.14 +0.1
532,110 - GFF1857 0.21 +0.1
532,110 - GFF1857 0.21 +1.1
532,110 - GFF1857 0.21 -0.1
532,116 - GFF1857 0.22 +0.1
532,250 + GFF1857 0.32 -0.9
532,251 - GFF1857 0.32 -0.1
532,251 - GFF1857 0.32 -0.3

Or see this region's nucleotide sequence