Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1610 and GFF1611 are separated by 5 nucleotides GFF1611 and GFF1612 are separated by 6 nucleotides GFF1612 and GFF1613 are separated by 43 nucleotides GFF1613 and GFF1614 are separated by 2 nucleotides GFF1614 and GFF1615 overlap by 4 nucleotides
GFF1610 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 208,993 to 210,459
GFF1610
GFF1611 - no description, at 210,465 to 210,812
GFF1611
GFF1612 - no description, at 210,819 to 211,112
GFF1612
GFF1613 - Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1), at 211,156 to 211,980
GFF1613
GFF1614 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 211,983 to 212,783
GFF1614
GFF1615 - Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1), at 212,780 to 213,649
GFF1615
Position (kb) 211
212 Strain fitness (log2 ratio) -1
0
1
2
3 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.248 kb on - strand, within GFF1610 at 210.458 kb on - strand at 210.487 kb on + strand at 210.488 kb on - strand at 210.494 kb on - strand at 210.494 kb on - strand at 210.533 kb on + strand, within GFF1611 at 210.533 kb on + strand, within GFF1611 at 210.533 kb on + strand, within GFF1611 at 210.534 kb on - strand, within GFF1611 at 210.534 kb on - strand, within GFF1611 at 210.534 kb on - strand, within GFF1611 at 210.542 kb on + strand, within GFF1611 at 210.548 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.926 kb on + strand, within GFF1612 at 210.926 kb on + strand, within GFF1612 at 210.927 kb on - strand, within GFF1612 at 210.927 kb on - strand, within GFF1612 at 210.943 kb on + strand, within GFF1612 at 210.943 kb on + strand, within GFF1612 at 210.943 kb on + strand, within GFF1612 at 210.944 kb on - strand, within GFF1612 at 210.944 kb on - strand, within GFF1612 at 211.023 kb on + strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.033 kb on + strand, within GFF1612 at 211.033 kb on + strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.035 kb on + strand, within GFF1612 at 211.035 kb on + strand, within GFF1612 at 211.036 kb on - strand, within GFF1612 at 211.041 kb on + strand, within GFF1612 at 211.041 kb on + strand, within GFF1612 at 211.042 kb on - strand, within GFF1612 at 211.042 kb on - strand, within GFF1612 at 211.231 kb on - strand at 211.236 kb on + strand at 211.237 kb on - strand at 211.361 kb on + strand, within GFF1613 at 211.640 kb on + strand, within GFF1613 at 211.640 kb on + strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.958 kb on + strand at 212.069 kb on - strand, within GFF1614 at 212.069 kb on - strand, within GFF1614 at 212.069 kb on - strand, within GFF1614 at 212.069 kb on - strand, within GFF1614 at 212.233 kb on + strand, within GFF1614 at 212.234 kb on - strand, within GFF1614 at 212.234 kb on - strand, within GFF1614 at 212.774 kb on + strand at 212.838 kb on + strand at 212.839 kb on - strand at 212.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 210,247 + GFF1610 0.85 -0.0 210,247 + GFF1610 0.85 +0.3 210,247 + GFF1610 0.85 +1.1 210,247 + GFF1610 0.85 +1.1 210,247 + GFF1610 0.85 -0.5 210,247 + GFF1610 0.85 +0.1 210,248 - GFF1610 0.86 -0.8 210,458 - -0.4 210,487 + +0.2 210,488 - -0.7 210,494 - +0.8 210,494 - -1.0 210,533 + GFF1611 0.20 -1.3 210,533 + GFF1611 0.20 +0.1 210,533 + GFF1611 0.20 -0.5 210,534 - GFF1611 0.20 -0.5 210,534 - GFF1611 0.20 +0.5 210,534 - GFF1611 0.20 -0.0 210,542 + GFF1611 0.22 -0.5 210,548 + GFF1611 0.24 +0.7 210,747 + GFF1611 0.81 +0.5 210,747 + GFF1611 0.81 -0.3 210,747 + GFF1611 0.81 -0.3 210,747 + GFF1611 0.81 -0.8 210,747 + GFF1611 0.81 +0.5 210,747 + GFF1611 0.81 +0.2 210,748 - GFF1611 0.81 -0.3 210,748 - GFF1611 0.81 +0.3 210,748 - GFF1611 0.81 -0.1 210,748 - GFF1611 0.81 +0.4 210,748 - GFF1611 0.81 -0.4 210,748 - GFF1611 0.81 +0.1 210,926 + GFF1612 0.36 -0.6 210,926 + GFF1612 0.36 +1.7 210,927 - GFF1612 0.37 -0.3 210,927 - GFF1612 0.37 -0.5 210,943 + GFF1612 0.42 +0.3 210,943 + GFF1612 0.42 -0.1 210,943 + GFF1612 0.42 +0.3 210,944 - GFF1612 0.43 -0.7 210,944 - GFF1612 0.43 -0.6 211,023 + GFF1612 0.69 +1.7 211,024 - GFF1612 0.70 +0.0 211,024 - GFF1612 0.70 -0.2 211,024 - GFF1612 0.70 -1.1 211,024 - GFF1612 0.70 +0.5 211,024 - GFF1612 0.70 -0.1 211,033 + GFF1612 0.73 +0.2 211,033 + GFF1612 0.73 +0.1 211,034 - GFF1612 0.73 +0.2 211,034 - GFF1612 0.73 -0.4 211,034 - GFF1612 0.73 -0.3 211,034 - GFF1612 0.73 +0.0 211,034 - GFF1612 0.73 +0.5 211,035 + GFF1612 0.73 -0.3 211,035 + GFF1612 0.73 -0.3 211,036 - GFF1612 0.74 -0.0 211,041 + GFF1612 0.76 +0.1 211,041 + GFF1612 0.76 +0.4 211,042 - GFF1612 0.76 -0.4 211,042 - GFF1612 0.76 +3.5 211,231 - -0.2 211,236 + -0.3 211,237 - +0.2 211,361 + GFF1613 0.25 -0.7 211,640 + GFF1613 0.59 +0.1 211,640 + GFF1613 0.59 -1.2 211,641 - GFF1613 0.59 -0.6 211,641 - GFF1613 0.59 -0.3 211,641 - GFF1613 0.59 -0.3 211,641 - GFF1613 0.59 +0.2 211,958 + -0.6 212,069 - GFF1614 0.11 -0.3 212,069 - GFF1614 0.11 +0.4 212,069 - GFF1614 0.11 -0.9 212,069 - GFF1614 0.11 +0.9 212,233 + GFF1614 0.31 -0.6 212,234 - GFF1614 0.31 -0.7 212,234 - GFF1614 0.31 -1.4 212,774 + -0.3 212,838 + -1.0 212,839 - +0.1 212,839 - -0.1
Or see this region's nucleotide sequence