Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF157 and GFF158 overlap by 4 nucleotides GFF158 and GFF159 overlap by 13 nucleotides GFF159 and GFF160 are separated by 103 nucleotides GFF160 and GFF161 are separated by 2 nucleotides
GFF157 - Methyltransferase type 12, at 185,495 to 186,100
GFF157
GFF158 - LmbE-like protein, at 186,097 to 186,858
GFF158
GFF159 - Acyl-CoA dehydrogenase/oxidase domain protein, at 186,846 to 187,865
GFF159
GFF160 - hypothetical protein, at 187,969 to 188,559
GFF160
GFF161 - hypothetical protein, at 188,562 to 189,185
GFF161
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.958 kb on + strand, within GFF157 at 185.958 kb on + strand, within GFF157 at 185.959 kb on - strand, within GFF157 at 185.971 kb on - strand, within GFF157 at 185.971 kb on - strand, within GFF157 at 186.021 kb on + strand, within GFF157 at 186.022 kb on - strand, within GFF157 at 186.042 kb on + strand at 186.043 kb on - strand at 186.043 kb on - strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.064 kb on - strand at 186.064 kb on - strand at 186.064 kb on - strand at 186.078 kb on + strand at 186.078 kb on + strand at 186.116 kb on + strand at 186.116 kb on + strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.847 kb on + strand at 186.848 kb on - strand at 186.848 kb on - strand at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.164 kb on - strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.877 kb on - strand at 187.924 kb on + strand at 187.924 kb on + strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 188.168 kb on + strand, within GFF160 at 188.169 kb on - strand, within GFF160 at 188.177 kb on + strand, within GFF160 at 188.178 kb on - strand, within GFF160 at 188.264 kb on + strand, within GFF160 at 188.265 kb on - strand, within GFF160 at 188.265 kb on - strand, within GFF160 at 188.402 kb on + strand, within GFF160 at 188.402 kb on + strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.574 kb on - strand at 188.596 kb on + strand at 188.596 kb on + strand at 188.596 kb on + strand at 188.596 kb on + strand at 188.597 kb on - strand at 188.597 kb on - strand at 188.662 kb on + strand, within GFF161 at 188.662 kb on + strand, within GFF161 at 188.662 kb on + strand, within GFF161 at 188.662 kb on + strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.735 kb on + strand, within GFF161 at 188.736 kb on - strand, within GFF161 at 188.819 kb on + strand, within GFF161 at 188.819 kb on + strand, within GFF161 at 188.820 kb on - strand, within GFF161 at 188.820 kb on - strand, within GFF161 at 188.820 kb on - strand, within GFF161
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 185,958 + GFF157 0.76 -0.6 185,958 + GFF157 0.76 +0.2 185,959 - GFF157 0.77 +1.0 185,971 - GFF157 0.79 +1.2 185,971 - GFF157 0.79 -1.9 186,021 + GFF157 0.87 -0.2 186,022 - GFF157 0.87 +0.2 186,042 + -0.2 186,043 - -0.5 186,043 - -0.3 186,063 + +0.1 186,063 + +1.6 186,063 + +0.8 186,063 + +0.7 186,064 - +0.4 186,064 - +1.2 186,064 - -1.2 186,078 + -0.3 186,078 + -1.3 186,116 + +0.7 186,116 + -0.1 186,117 - -0.0 186,117 - +1.6 186,117 - -0.5 186,117 - -0.5 186,847 + -0.8 186,848 - -0.2 186,848 - -0.0 187,163 + GFF159 0.31 -0.1 187,163 + GFF159 0.31 -0.8 187,163 + GFF159 0.31 -1.1 187,163 + GFF159 0.31 -1.6 187,163 + GFF159 0.31 -0.3 187,163 + GFF159 0.31 +0.6 187,164 - GFF159 0.31 -1.2 187,303 + GFF159 0.45 -0.8 187,303 + GFF159 0.45 -0.5 187,303 + GFF159 0.45 +0.3 187,303 + GFF159 0.45 -0.2 187,304 - GFF159 0.45 +1.2 187,304 - GFF159 0.45 -1.0 187,304 - GFF159 0.45 +0.1 187,304 - GFF159 0.45 -1.9 187,839 + -0.3 187,839 + -0.0 187,839 + -1.2 187,839 + -1.3 187,839 + -0.1 187,839 + -0.1 187,839 + -1.1 187,839 + -0.3 187,839 + -0.6 187,839 + +0.2 187,839 + +1.2 187,839 + -0.1 187,839 + -0.6 187,839 + -0.0 187,839 + -0.4 187,840 - +0.1 187,840 - -1.9 187,840 - -0.3 187,840 - +0.5 187,840 - -1.1 187,840 - -0.6 187,840 - -0.6 187,840 - +2.6 187,840 - +0.2 187,840 - -1.3 187,840 - -0.7 187,840 - +0.1 187,840 - +0.5 187,840 - -0.1 187,840 - +0.5 187,840 - -0.1 187,840 - -0.8 187,840 - -0.6 187,840 - +0.7 187,840 - -0.7 187,877 - +0.8 187,924 + +0.5 187,924 + -0.6 187,925 - +0.5 187,925 - -0.2 187,925 - +0.1 187,925 - -0.0 187,925 - +0.2 187,925 - -0.2 187,925 - +0.0 188,168 + GFF160 0.34 +1.2 188,169 - GFF160 0.34 -0.2 188,177 + GFF160 0.35 +1.0 188,178 - GFF160 0.35 +1.0 188,264 + GFF160 0.50 -0.9 188,265 - GFF160 0.50 +0.0 188,265 - GFF160 0.50 -0.3 188,402 + GFF160 0.73 +0.7 188,402 + GFF160 0.73 -0.2 188,403 - GFF160 0.73 +0.3 188,403 - GFF160 0.73 +0.8 188,403 - GFF160 0.73 +0.8 188,403 - GFF160 0.73 +1.2 188,574 - +0.5 188,596 + +1.6 188,596 + +0.2 188,596 + -0.1 188,596 + +0.0 188,597 - +0.2 188,597 - +0.8 188,662 + GFF161 0.16 -0.3 188,662 + GFF161 0.16 -0.1 188,662 + GFF161 0.16 -0.2 188,662 + GFF161 0.16 -1.1 188,663 - GFF161 0.16 +1.2 188,663 - GFF161 0.16 -0.6 188,663 - GFF161 0.16 -0.0 188,663 - GFF161 0.16 -0.2 188,728 + GFF161 0.27 -0.2 188,728 + GFF161 0.27 +1.2 188,728 + GFF161 0.27 -0.2 188,728 + GFF161 0.27 +0.1 188,728 + GFF161 0.27 -0.8 188,728 + GFF161 0.27 +2.0 188,728 + GFF161 0.27 +0.8 188,728 + GFF161 0.27 +0.0 188,728 + GFF161 0.27 +0.7 188,729 - GFF161 0.27 -0.5 188,729 - GFF161 0.27 +0.0 188,729 - GFF161 0.27 -0.3 188,729 - GFF161 0.27 +0.3 188,729 - GFF161 0.27 -0.0 188,729 - GFF161 0.27 -0.6 188,729 - GFF161 0.27 -1.0 188,735 + GFF161 0.28 +0.4 188,736 - GFF161 0.28 -0.4 188,819 + GFF161 0.41 +0.2 188,819 + GFF161 0.41 +0.2 188,820 - GFF161 0.41 -0.2 188,820 - GFF161 0.41 +1.0 188,820 - GFF161 0.41 +0.1
Or see this region's nucleotide sequence