Strain Fitness in Variovorax sp. SCN45 around GFF1528

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1527 and GFF1528 are separated by 6 nucleotidesGFF1528 and GFF1529 overlap by 7 nucleotidesGFF1529 and GFF1530 are separated by 77 nucleotides GFF1527 - Ferrichrome-iron receptor, at 123,139 to 125,598 GFF1527 GFF1528 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 125,605 to 126,858 GFF1528 GFF1529 - Transcriptional regulator, AcrR family, at 126,852 to 127,421 GFF1529 GFF1530 - Nucleoside-diphosphate-sugar epimerases, at 127,499 to 128,392 GFF1530 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 124.705 kb on + strand, within GFF1527at 124.705 kb on + strand, within GFF1527at 124.705 kb on + strand, within GFF1527at 124.706 kb on - strand, within GFF1527at 124.706 kb on - strand, within GFF1527at 124.706 kb on - strand, within GFF1527at 124.706 kb on - strand, within GFF1527at 124.855 kb on + strand, within GFF1527at 124.855 kb on + strand, within GFF1527at 124.856 kb on - strand, within GFF1527at 124.984 kb on + strand, within GFF1527at 125.026 kb on + strand, within GFF1527at 125.027 kb on - strand, within GFF1527at 125.027 kb on - strand, within GFF1527at 125.167 kb on + strand, within GFF1527at 125.167 kb on + strand, within GFF1527at 125.167 kb on + strand, within GFF1527at 125.167 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.173 kb on + strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.174 kb on - strand, within GFF1527at 125.281 kb on + strand, within GFF1527at 125.281 kb on + strand, within GFF1527at 125.281 kb on + strand, within GFF1527at 125.281 kb on + strand, within GFF1527at 125.282 kb on - strand, within GFF1527at 125.282 kb on - strand, within GFF1527at 125.339 kb on - strand, within GFF1527at 125.339 kb on - strand, within GFF1527at 125.339 kb on - strand, within GFF1527at 125.359 kb on + strandat 125.420 kb on - strandat 125.420 kb on - strandat 125.420 kb on - strandat 125.420 kb on - strandat 125.428 kb on + strandat 125.428 kb on + strandat 125.428 kb on + strandat 125.429 kb on - strandat 125.446 kb on + strandat 125.506 kb on + strandat 125.506 kb on + strandat 125.506 kb on + strandat 125.507 kb on - strandat 125.507 kb on - strandat 125.549 kb on - strandat 125.549 kb on - strandat 125.549 kb on - strandat 125.551 kb on + strandat 125.551 kb on + strandat 125.551 kb on + strandat 125.551 kb on + strandat 125.552 kb on - strandat 125.587 kb on + strandat 125.587 kb on + strandat 125.587 kb on + strandat 125.587 kb on + strandat 125.951 kb on - strand, within GFF1528at 125.951 kb on - strand, within GFF1528at 125.951 kb on - strand, within GFF1528at 126.025 kb on + strand, within GFF1528at 126.026 kb on - strand, within GFF1528at 126.037 kb on + strand, within GFF1528at 126.037 kb on + strand, within GFF1528at 126.038 kb on - strand, within GFF1528at 126.050 kb on + strand, within GFF1528at 126.050 kb on + strand, within GFF1528at 126.050 kb on + strand, within GFF1528at 126.050 kb on + strand, within GFF1528at 126.050 kb on + strand, within GFF1528at 126.050 kb on + strand, within GFF1528at 126.051 kb on - strand, within GFF1528at 126.051 kb on - strand, within GFF1528at 126.051 kb on - strand, within GFF1528at 126.136 kb on + strand, within GFF1528at 126.136 kb on + strand, within GFF1528at 126.136 kb on + strand, within GFF1528at 126.136 kb on + strand, within GFF1528at 126.136 kb on + strand, within GFF1528at 126.136 kb on + strand, within GFF1528at 126.137 kb on - strand, within GFF1528at 126.137 kb on - strand, within GFF1528at 126.137 kb on - strand, within GFF1528at 126.137 kb on - strand, within GFF1528at 126.137 kb on - strand, within GFF1528at 126.137 kb on - strand, within GFF1528at 126.138 kb on + strand, within GFF1528at 126.138 kb on + strand, within GFF1528at 126.138 kb on + strand, within GFF1528at 126.138 kb on + strand, within GFF1528at 126.139 kb on - strand, within GFF1528at 126.258 kb on - strand, within GFF1528at 126.384 kb on - strand, within GFF1528at 126.493 kb on + strand, within GFF1528at 126.494 kb on - strand, within GFF1528at 126.506 kb on - strand, within GFF1528at 126.506 kb on - strand, within GFF1528at 126.506 kb on - strand, within GFF1528at 126.514 kb on + strand, within GFF1528at 126.515 kb on - strand, within GFF1528at 126.580 kb on + strand, within GFF1528at 126.580 kb on + strand, within GFF1528at 126.581 kb on - strand, within GFF1528at 126.581 kb on - strand, within GFF1528at 126.764 kb on + strandat 126.854 kb on - strandat 127.283 kb on - strand, within GFF1529at 127.456 kb on + strandat 127.457 kb on - strandat 127.463 kb on - strandat 127.463 kb on - strandat 127.578 kb on + strandat 127.579 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
124,705 + GFF1527 0.64 +0.0
124,705 + GFF1527 0.64 -0.4
124,705 + GFF1527 0.64 -0.7
124,706 - GFF1527 0.64 -0.3
124,706 - GFF1527 0.64 -0.4
124,706 - GFF1527 0.64 -0.4
124,706 - GFF1527 0.64 -0.1
124,855 + GFF1527 0.70 +0.3
124,855 + GFF1527 0.70 +0.4
124,856 - GFF1527 0.70 -2.0
124,984 + GFF1527 0.75 +0.0
125,026 + GFF1527 0.77 -0.1
125,027 - GFF1527 0.77 -0.4
125,027 - GFF1527 0.77 -0.4
125,167 + GFF1527 0.82 +1.1
125,167 + GFF1527 0.82 +0.0
125,167 + GFF1527 0.82 -1.4
125,167 + GFF1527 0.82 +0.5
125,173 + GFF1527 0.83 +0.0
125,173 + GFF1527 0.83 +0.0
125,173 + GFF1527 0.83 +1.6
125,173 + GFF1527 0.83 +1.9
125,173 + GFF1527 0.83 -0.1
125,173 + GFF1527 0.83 +0.0
125,173 + GFF1527 0.83 +0.4
125,173 + GFF1527 0.83 -0.4
125,173 + GFF1527 0.83 +0.2
125,173 + GFF1527 0.83 -0.4
125,173 + GFF1527 0.83 -0.1
125,173 + GFF1527 0.83 -0.2
125,173 + GFF1527 0.83 -0.1
125,173 + GFF1527 0.83 +0.1
125,173 + GFF1527 0.83 +0.4
125,173 + GFF1527 0.83 +0.2
125,173 + GFF1527 0.83 -1.4
125,174 - GFF1527 0.83 -0.2
125,174 - GFF1527 0.83 +1.8
125,174 - GFF1527 0.83 -1.8
125,174 - GFF1527 0.83 +0.2
125,174 - GFF1527 0.83 -0.2
125,174 - GFF1527 0.83 -0.5
125,174 - GFF1527 0.83 -0.1
125,174 - GFF1527 0.83 +0.8
125,281 + GFF1527 0.87 -0.3
125,281 + GFF1527 0.87 -1.2
125,281 + GFF1527 0.87 -0.8
125,281 + GFF1527 0.87 -0.2
125,282 - GFF1527 0.87 -0.2
125,282 - GFF1527 0.87 -0.7
125,339 - GFF1527 0.89 -2.2
125,339 - GFF1527 0.89 -0.2
125,339 - GFF1527 0.89 +0.4
125,359 + +0.0
125,420 - -0.6
125,420 - -0.5
125,420 - +0.7
125,420 - -2.5
125,428 + -0.3
125,428 + +0.3
125,428 + -1.0
125,429 - -0.7
125,446 + -0.2
125,506 + -0.4
125,506 + +1.0
125,506 + -0.1
125,507 - -1.1
125,507 - +2.6
125,549 - +0.3
125,549 - -0.1
125,549 - +0.1
125,551 + -0.9
125,551 + +0.2
125,551 + +0.6
125,551 + +0.4
125,552 - -0.1
125,587 + -0.2
125,587 + +0.2
125,587 + -0.7
125,587 + -1.2
125,951 - GFF1528 0.28 -1.7
125,951 - GFF1528 0.28 +0.0
125,951 - GFF1528 0.28 -0.0
126,025 + GFF1528 0.33 +0.4
126,026 - GFF1528 0.34 +0.8
126,037 + GFF1528 0.34 -0.9
126,037 + GFF1528 0.34 +0.4
126,038 - GFF1528 0.35 -0.3
126,050 + GFF1528 0.35 -0.8
126,050 + GFF1528 0.35 -0.0
126,050 + GFF1528 0.35 +0.6
126,050 + GFF1528 0.35 +0.0
126,050 + GFF1528 0.35 -0.7
126,050 + GFF1528 0.35 +0.4
126,051 - GFF1528 0.36 +0.4
126,051 - GFF1528 0.36 +0.9
126,051 - GFF1528 0.36 +0.8
126,136 + GFF1528 0.42 -1.0
126,136 + GFF1528 0.42 -0.2
126,136 + GFF1528 0.42 -0.8
126,136 + GFF1528 0.42 -1.2
126,136 + GFF1528 0.42 -0.8
126,136 + GFF1528 0.42 -0.3
126,137 - GFF1528 0.42 +0.8
126,137 - GFF1528 0.42 +0.4
126,137 - GFF1528 0.42 +0.2
126,137 - GFF1528 0.42 -0.7
126,137 - GFF1528 0.42 -0.5
126,137 - GFF1528 0.42 +0.0
126,138 + GFF1528 0.43 -0.2
126,138 + GFF1528 0.43 +0.9
126,138 + GFF1528 0.43 +0.0
126,138 + GFF1528 0.43 -1.5
126,139 - GFF1528 0.43 +1.3
126,258 - GFF1528 0.52 +0.9
126,384 - GFF1528 0.62 -0.2
126,493 + GFF1528 0.71 -0.3
126,494 - GFF1528 0.71 +0.2
126,506 - GFF1528 0.72 +0.8
126,506 - GFF1528 0.72 -1.2
126,506 - GFF1528 0.72 +0.3
126,514 + GFF1528 0.72 +0.8
126,515 - GFF1528 0.73 -0.3
126,580 + GFF1528 0.78 -0.2
126,580 + GFF1528 0.78 -0.1
126,581 - GFF1528 0.78 -1.6
126,581 - GFF1528 0.78 +0.6
126,764 + -0.2
126,854 - -0.2
127,283 - GFF1529 0.76 +0.6
127,456 + -0.7
127,457 - +1.6
127,463 - -0.6
127,463 - -0.3
127,578 + +1.4
127,579 - +0.6

Or see this region's nucleotide sequence