Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1444 and GFF1445 are separated by 10 nucleotides GFF1445 and GFF1446 are separated by 30 nucleotides GFF1446 and GFF1447 are separated by 55 nucleotides GFF1447 and GFF1448 are separated by 248 nucleotides GFF1448 and GFF1449 are separated by 12 nucleotides
GFF1444 - PRC-barrel, at 36,208 to 36,546
GFF1444
GFF1445 - no description, at 36,557 to 36,670
GFF1445
GFF1446 - no description, at 36,701 to 37,087
GFF1446
GFF1447 - hypothetical protein, at 37,143 to 37,295
GFF1447
GFF1448 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 37,544 to 40,723
GFF1448
GFF1449 - Predicted pyridoxine biosynthesis protein (probably from glycolaldehide), at 40,736 to 42,049
GFF1449
Position (kb) 37
38
39
40
41 Strain fitness (log2 ratio) -1
0
1
2 at 36.566 kb on + strand at 36.660 kb on + strand at 36.660 kb on + strand at 36.661 kb on - strand at 36.661 kb on - strand at 36.668 kb on + strand at 37.162 kb on + strand, within GFF1447 at 37.163 kb on - strand, within GFF1447 at 37.163 kb on - strand, within GFF1447 at 37.388 kb on - strand at 37.388 kb on - strand at 37.519 kb on + strand at 37.519 kb on + strand at 37.519 kb on + strand at 37.519 kb on + strand at 37.520 kb on - strand at 37.543 kb on + strand at 37.543 kb on + strand at 37.543 kb on + strand at 37.544 kb on - strand at 37.607 kb on + strand at 37.607 kb on + strand at 37.608 kb on - strand at 37.709 kb on + strand at 37.710 kb on - strand at 37.988 kb on + strand, within GFF1448 at 37.988 kb on + strand, within GFF1448 at 37.988 kb on + strand, within GFF1448 at 37.989 kb on - strand, within GFF1448 at 37.989 kb on - strand, within GFF1448 at 37.989 kb on - strand, within GFF1448 at 37.989 kb on - strand, within GFF1448 at 37.989 kb on - strand, within GFF1448 at 37.991 kb on + strand, within GFF1448 at 37.991 kb on + strand, within GFF1448 at 37.992 kb on - strand, within GFF1448 at 37.992 kb on - strand, within GFF1448 at 38.111 kb on + strand, within GFF1448 at 38.165 kb on + strand, within GFF1448 at 38.165 kb on + strand, within GFF1448 at 38.166 kb on - strand, within GFF1448 at 38.501 kb on + strand, within GFF1448 at 38.976 kb on - strand, within GFF1448 at 39.353 kb on + strand, within GFF1448 at 39.354 kb on - strand, within GFF1448 at 39.863 kb on + strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 40.437 kb on - strand at 40.549 kb on + strand at 40.640 kb on + strand at 40.640 kb on + strand at 40.722 kb on - strand at 40.722 kb on - strand at 40.879 kb on - strand, within GFF1449 at 41.219 kb on + strand, within GFF1449 at 41.220 kb on - strand, within GFF1449 at 41.662 kb on - strand, within GFF1449
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 36,566 + -0.2 36,660 + -0.0 36,660 + +0.1 36,661 - +0.4 36,661 - -0.1 36,668 + +0.6 37,162 + GFF1447 0.12 +1.0 37,163 - GFF1447 0.13 -0.6 37,163 - GFF1447 0.13 -0.4 37,388 - +0.3 37,388 - -0.0 37,519 + +0.3 37,519 + +0.4 37,519 + -0.4 37,519 + -0.7 37,520 - -0.8 37,543 + -0.2 37,543 + -1.1 37,543 + -1.0 37,544 - -0.5 37,607 + +0.6 37,607 + +0.0 37,608 - +0.1 37,709 + -0.0 37,710 - +0.6 37,988 + GFF1448 0.14 +0.3 37,988 + GFF1448 0.14 -0.2 37,988 + GFF1448 0.14 +0.6 37,989 - GFF1448 0.14 +0.1 37,989 - GFF1448 0.14 +0.5 37,989 - GFF1448 0.14 +0.4 37,989 - GFF1448 0.14 +0.1 37,989 - GFF1448 0.14 +2.1 37,991 + GFF1448 0.14 -0.1 37,991 + GFF1448 0.14 +0.1 37,992 - GFF1448 0.14 +0.1 37,992 - GFF1448 0.14 +0.9 38,111 + GFF1448 0.18 +0.4 38,165 + GFF1448 0.20 -0.1 38,165 + GFF1448 0.20 -0.4 38,166 - GFF1448 0.20 +0.4 38,501 + GFF1448 0.30 -0.1 38,976 - GFF1448 0.45 -0.1 39,353 + GFF1448 0.57 +1.4 39,354 - GFF1448 0.57 -0.0 39,863 + GFF1448 0.73 -0.4 39,864 - GFF1448 0.73 +0.1 39,864 - GFF1448 0.73 +0.4 39,864 - GFF1448 0.73 -0.2 40,437 - -0.9 40,549 + +0.3 40,640 + -1.0 40,640 + +0.7 40,722 - -0.8 40,722 - -0.6 40,879 - GFF1449 0.11 -0.5 41,219 + GFF1449 0.37 +0.5 41,220 - GFF1449 0.37 -0.5 41,662 - GFF1449 0.70 +0.6
Or see this region's nucleotide sequence