Strain Fitness in Variovorax sp. SCN45 around GFF136

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF134 and GFF135 are separated by 142 nucleotidesGFF135 and GFF136 are separated by 10 nucleotidesGFF136 and GFF137 are separated by 56 nucleotides GFF134 - putative oxidoreductase (AsfA-like), putative L-aspartate oxidase( EC:1.4.3.16 ), at 161,821 to 163,443 GFF134 GFF135 - no description, at 163,586 to 164,020 GFF135 GFF136 - Uncharacterized MFS-type transporter, at 164,031 to 165,458 GFF136 GFF137 - Transcriptional regulator PA4174, LysR family, at 165,515 to 166,492 GFF137 Position (kb) 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 163.031 kb on + strand, within GFF134at 163.032 kb on - strand, within GFF134at 163.032 kb on - strand, within GFF134at 163.479 kb on + strandat 163.480 kb on - strandat 163.524 kb on + strandat 163.697 kb on + strand, within GFF135at 163.697 kb on + strand, within GFF135at 163.697 kb on + strand, within GFF135at 163.697 kb on + strand, within GFF135at 163.697 kb on + strand, within GFF135at 163.697 kb on + strand, within GFF135at 163.697 kb on + strand, within GFF135at 163.698 kb on - strand, within GFF135at 163.698 kb on - strand, within GFF135at 163.754 kb on + strand, within GFF135at 163.754 kb on + strand, within GFF135at 163.755 kb on - strand, within GFF135at 163.755 kb on - strand, within GFF135at 163.919 kb on + strand, within GFF135at 163.919 kb on + strand, within GFF135at 163.919 kb on + strand, within GFF135at 163.934 kb on + strand, within GFF135at 163.943 kb on + strand, within GFF135at 163.976 kb on + strand, within GFF135at 163.976 kb on + strand, within GFF135at 163.976 kb on + strand, within GFF135at 163.977 kb on - strandat 164.032 kb on + strandat 164.032 kb on + strandat 164.033 kb on - strandat 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on - strand, within GFF136at 164.660 kb on - strand, within GFF136at 164.660 kb on - strand, within GFF136at 164.660 kb on - strand, within GFF136at 164.965 kb on + strand, within GFF136at 164.966 kb on - strand, within GFF136at 165.090 kb on + strand, within GFF136at 165.090 kb on + strand, within GFF136at 165.090 kb on + strand, within GFF136at 165.091 kb on - strand, within GFF136at 165.103 kb on + strand, within GFF136at 165.136 kb on + strand, within GFF136at 165.301 kb on + strand, within GFF136at 165.302 kb on - strand, within GFF136at 165.376 kb on + strandat 165.376 kb on + strandat 165.376 kb on + strandat 165.377 kb on - strandat 165.532 kb on + strandat 165.532 kb on + strandat 165.532 kb on + strandat 165.532 kb on + strandat 165.533 kb on - strandat 165.533 kb on - strandat 165.533 kb on - strandat 165.533 kb on - strandat 165.534 kb on + strandat 165.534 kb on + strandat 165.534 kb on + strandat 165.535 kb on - strandat 165.673 kb on - strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.751 kb on - strand, within GFF137at 165.751 kb on - strand, within GFF137at 165.828 kb on + strand, within GFF137at 165.829 kb on - strand, within GFF137at 165.880 kb on - strand, within GFF137at 165.880 kb on - strand, within GFF137at 165.981 kb on + strand, within GFF137at 165.981 kb on + strand, within GFF137at 165.982 kb on - strand, within GFF137at 165.982 kb on - strand, within GFF137at 165.997 kb on - strand, within GFF137at 165.997 kb on - strand, within GFF137at 166.004 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.300 kb on - strand, within GFF137

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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163,031 + GFF134 0.75 -0.8
163,032 - GFF134 0.75 -0.2
163,032 - GFF134 0.75 +0.6
163,479 + +0.1
163,480 - +0.0
163,524 + -1.2
163,697 + GFF135 0.26 -0.6
163,697 + GFF135 0.26 +0.2
163,697 + GFF135 0.26 -0.2
163,697 + GFF135 0.26 -0.4
163,697 + GFF135 0.26 +0.2
163,697 + GFF135 0.26 +0.2
163,697 + GFF135 0.26 +3.2
163,698 - GFF135 0.26 +0.8
163,698 - GFF135 0.26 -0.1
163,754 + GFF135 0.39 +0.2
163,754 + GFF135 0.39 +0.0
163,755 - GFF135 0.39 +1.8
163,755 - GFF135 0.39 -1.4
163,919 + GFF135 0.77 -0.2
163,919 + GFF135 0.77 +0.1
163,919 + GFF135 0.77 -0.0
163,934 + GFF135 0.80 -0.1
163,943 + GFF135 0.82 +1.8
163,976 + GFF135 0.90 -1.2
163,976 + GFF135 0.90 +0.4
163,976 + GFF135 0.90 -2.1
163,977 - -0.6
164,032 + +0.1
164,032 + -2.4
164,033 - -0.7
164,659 + GFF136 0.44 -1.2
164,659 + GFF136 0.44 -0.2
164,659 + GFF136 0.44 -1.1
164,659 + GFF136 0.44 -0.6
164,659 + GFF136 0.44 -0.2
164,659 - GFF136 0.44 +0.2
164,660 - GFF136 0.44 +0.5
164,660 - GFF136 0.44 -0.3
164,660 - GFF136 0.44 +0.0
164,965 + GFF136 0.65 -1.1
164,966 - GFF136 0.65 +0.2
165,090 + GFF136 0.74 +1.6
165,090 + GFF136 0.74 +0.1
165,090 + GFF136 0.74 -1.9
165,091 - GFF136 0.74 -1.2
165,103 + GFF136 0.75 -0.0
165,136 + GFF136 0.77 -0.2
165,301 + GFF136 0.89 -0.2
165,302 - GFF136 0.89 -0.7
165,376 + -0.1
165,376 + +0.7
165,376 + +0.6
165,377 - -0.4
165,532 + -0.8
165,532 + -0.0
165,532 + -0.7
165,532 + -0.3
165,533 - -0.9
165,533 - -0.5
165,533 - +0.2
165,533 - -0.6
165,534 + -2.8
165,534 + -0.4
165,534 + -1.9
165,535 - +1.0
165,673 - GFF137 0.16 -0.6
165,750 + GFF137 0.24 -0.9
165,750 + GFF137 0.24 +0.4
165,750 + GFF137 0.24 -0.2
165,750 + GFF137 0.24 +0.4
165,750 + GFF137 0.24 -1.8
165,750 + GFF137 0.24 +0.0
165,751 - GFF137 0.24 +1.2
165,751 - GFF137 0.24 +0.4
165,828 + GFF137 0.32 -1.4
165,829 - GFF137 0.32 +0.7
165,880 - GFF137 0.37 -0.7
165,880 - GFF137 0.37 -0.5
165,981 + GFF137 0.48 +0.6
165,981 + GFF137 0.48 -0.0
165,982 - GFF137 0.48 -0.3
165,982 - GFF137 0.48 -0.9
165,997 - GFF137 0.49 -0.4
165,997 - GFF137 0.49 -0.7
166,004 + GFF137 0.50 +0.6
166,296 + GFF137 0.80 +0.2
166,296 + GFF137 0.80 +0.4
166,297 - GFF137 0.80 -0.9
166,297 - GFF137 0.80 +1.6
166,299 + GFF137 0.80 -1.0
166,299 + GFF137 0.80 -0.5
166,300 - GFF137 0.80 -1.2
166,300 - GFF137 0.80 -0.2

Or see this region's nucleotide sequence