Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1253 and GFF1254 are separated by 5 nucleotides GFF1254 and GFF1255 are separated by 37 nucleotides GFF1255 and GFF1256 are separated by 17 nucleotides GFF1256 and GFF1257 are separated by 75 nucleotides GFF1257 and GFF1259 are separated by 85 nucleotides
GFF1253 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 571,615 to 572,589
GFF1253
GFF1254 - Alkanesulfonate ABC transporter ATP-binding protein SsuB, at 572,595 to 573,428
GFF1254
GFF1255 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 573,466 to 574,752
GFF1255
GFF1256 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 574,770 to 575,366
GFF1256
GFF1257 - Organosulfonate utilization protein SsuF, at 575,442 to 575,657
GFF1257
GFF1259 - no description, at 575,743 to 575,880
GFF1259
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1 at 572.823 kb on + strand, within GFF1254 at 572.824 kb on - strand, within GFF1254 at 573.568 kb on + strand at 573.569 kb on - strand at 573.632 kb on - strand, within GFF1255 at 573.632 kb on - strand, within GFF1255 at 573.632 kb on - strand, within GFF1255 at 573.632 kb on - strand, within GFF1255 at 573.808 kb on + strand, within GFF1255 at 573.808 kb on + strand, within GFF1255 at 573.808 kb on + strand, within GFF1255 at 573.809 kb on - strand, within GFF1255 at 573.809 kb on - strand, within GFF1255 at 573.809 kb on - strand, within GFF1255 at 574.090 kb on + strand, within GFF1255 at 574.091 kb on - strand, within GFF1255 at 574.202 kb on - strand, within GFF1255 at 574.216 kb on + strand, within GFF1255 at 574.243 kb on + strand, within GFF1255 at 574.243 kb on + strand, within GFF1255 at 574.244 kb on - strand, within GFF1255 at 574.469 kb on - strand, within GFF1255 at 574.689 kb on - strand at 574.763 kb on + strand at 574.763 kb on + strand at 575.056 kb on - strand, within GFF1256 at 575.464 kb on + strand, within GFF1257 at 575.465 kb on - strand, within GFF1257 at 575.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 572,823 + GFF1254 0.27 +0.2 572,824 - GFF1254 0.27 -1.6 573,568 + -0.6 573,569 - +0.3 573,632 - GFF1255 0.13 -0.1 573,632 - GFF1255 0.13 -0.5 573,632 - GFF1255 0.13 -1.6 573,632 - GFF1255 0.13 +0.5 573,808 + GFF1255 0.27 +0.3 573,808 + GFF1255 0.27 -0.2 573,808 + GFF1255 0.27 -0.5 573,809 - GFF1255 0.27 -1.8 573,809 - GFF1255 0.27 -0.9 573,809 - GFF1255 0.27 -0.8 574,090 + GFF1255 0.48 +0.2 574,091 - GFF1255 0.49 -0.7 574,202 - GFF1255 0.57 -0.2 574,216 + GFF1255 0.58 +0.6 574,243 + GFF1255 0.60 +0.6 574,243 + GFF1255 0.60 -0.2 574,244 - GFF1255 0.60 -1.3 574,469 - GFF1255 0.78 +0.9 574,689 - -0.6 574,763 + -0.3 574,763 + -0.8 575,056 - GFF1256 0.48 -0.6 575,464 + GFF1257 0.10 -0.5 575,465 - GFF1257 0.11 -0.3 575,745 - -0.3
Or see this region's nucleotide sequence