Strain Fitness in Variovorax sp. SCN45 around GFF1090

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1089 and GFF1090 are separated by 13 nucleotidesGFF1090 and GFF1091 are separated by 18 nucleotides GFF1089 - Polyphosphate kinase (EC 2.7.4.1), at 400,364 to 402,502 GFF1089 GFF1090 - Phosphohistidine phosphatase SixA, at 402,516 to 402,983 GFF1090 GFF1091 - Exopolyphosphatase (EC 3.6.1.11), at 403,002 to 404,522 GFF1091 Position (kb) 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1at 401.666 kb on + strand, within GFF1089at 401.667 kb on - strand, within GFF1089at 401.667 kb on - strand, within GFF1089at 401.765 kb on + strand, within GFF1089at 401.765 kb on + strand, within GFF1089at 401.765 kb on + strand, within GFF1089at 401.765 kb on + strand, within GFF1089at 401.766 kb on - strand, within GFF1089at 401.766 kb on - strand, within GFF1089at 401.766 kb on - strand, within GFF1089at 401.766 kb on - strand, within GFF1089at 401.789 kb on + strand, within GFF1089at 401.790 kb on - strand, within GFF1089at 401.790 kb on - strand, within GFF1089at 402.176 kb on + strand, within GFF1089at 402.176 kb on + strand, within GFF1089at 402.177 kb on - strand, within GFF1089at 402.177 kb on - strand, within GFF1089at 402.177 kb on - strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.206 kb on + strand, within GFF1089at 402.207 kb on - strand, within GFF1089at 402.207 kb on - strand, within GFF1089at 402.207 kb on - strand, within GFF1089at 402.214 kb on + strand, within GFF1089at 402.368 kb on + strandat 402.368 kb on + strandat 402.368 kb on + strandat 402.368 kb on + strandat 402.369 kb on - strandat 402.369 kb on - strandat 402.369 kb on - strandat 402.369 kb on - strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.461 kb on + strandat 402.597 kb on - strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.726 kb on + strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 402.727 kb on - strand, within GFF1090at 403.020 kb on + strandat 403.020 kb on + strandat 403.021 kb on - strandat 403.088 kb on - strandat 403.088 kb on - strandat 403.351 kb on + strand, within GFF1091at 403.351 kb on + strand, within GFF1091at 403.351 kb on + strand, within GFF1091at 403.352 kb on - strand, within GFF1091at 403.369 kb on + strand, within GFF1091at 403.369 kb on + strand, within GFF1091at 403.618 kb on + strand, within GFF1091at 403.619 kb on - strand, within GFF1091at 403.886 kb on - strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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401,666 + GFF1089 0.61 -0.6
401,667 - GFF1089 0.61 +0.9
401,667 - GFF1089 0.61 -0.6
401,765 + GFF1089 0.65 -0.2
401,765 + GFF1089 0.65 +0.3
401,765 + GFF1089 0.65 -0.3
401,765 + GFF1089 0.65 +0.0
401,766 - GFF1089 0.66 -0.2
401,766 - GFF1089 0.66 +0.1
401,766 - GFF1089 0.66 -0.2
401,766 - GFF1089 0.66 +0.2
401,789 + GFF1089 0.67 +0.9
401,790 - GFF1089 0.67 +0.1
401,790 - GFF1089 0.67 -0.4
402,176 + GFF1089 0.85 +0.3
402,176 + GFF1089 0.85 -0.7
402,177 - GFF1089 0.85 -1.4
402,177 - GFF1089 0.85 +0.5
402,177 - GFF1089 0.85 +0.7
402,206 + GFF1089 0.86 +0.8
402,206 + GFF1089 0.86 -2.7
402,206 + GFF1089 0.86 +0.7
402,206 + GFF1089 0.86 +0.1
402,207 - GFF1089 0.86 -0.4
402,207 - GFF1089 0.86 +0.1
402,207 - GFF1089 0.86 +0.1
402,214 + GFF1089 0.86 -0.4
402,368 + +0.2
402,368 + -0.8
402,368 + +0.3
402,368 + +0.7
402,369 - +0.9
402,369 - -0.4
402,369 - -0.1
402,369 - +0.2
402,461 + -0.4
402,461 + -0.3
402,461 + -0.9
402,461 + -0.7
402,461 + -0.9
402,461 + -1.7
402,597 - GFF1090 0.17 -1.5
402,726 + GFF1090 0.45 -0.9
402,726 + GFF1090 0.45 +0.2
402,726 + GFF1090 0.45 -1.9
402,726 + GFF1090 0.45 -0.5
402,726 + GFF1090 0.45 -0.4
402,727 - GFF1090 0.45 -0.0
402,727 - GFF1090 0.45 +1.0
402,727 - GFF1090 0.45 -1.0
402,727 - GFF1090 0.45 +1.3
403,020 + -1.3
403,020 + +1.7
403,021 - -0.5
403,088 - -0.1
403,088 - +0.7
403,351 + GFF1091 0.23 +0.1
403,351 + GFF1091 0.23 -0.3
403,351 + GFF1091 0.23 -0.1
403,352 - GFF1091 0.23 +0.0
403,369 + GFF1091 0.24 -0.2
403,369 + GFF1091 0.24 -1.7
403,618 + GFF1091 0.40 +0.9
403,619 - GFF1091 0.41 -1.1
403,886 - GFF1091 0.58 +0.8
403,912 + GFF1091 0.60 +0.1
403,912 + GFF1091 0.60 -1.0
403,912 + GFF1091 0.60 +0.1
403,912 + GFF1091 0.60 -2.1
403,912 + GFF1091 0.60 +0.3
403,912 + GFF1091 0.60 -1.0
403,913 - GFF1091 0.60 -0.3
403,913 - GFF1091 0.60 -1.3
403,913 - GFF1091 0.60 +0.3
403,913 - GFF1091 0.60 -0.5
403,913 - GFF1091 0.60 -2.8
403,913 - GFF1091 0.60 +0.2

Or see this region's nucleotide sequence