Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1066 and GFF1067 are separated by 11 nucleotides GFF1067 and GFF1068 are separated by 2 nucleotides GFF1068 and GFF1069 overlap by 4 nucleotides GFF1069 and GFF1070 are separated by 63 nucleotides
GFF1066 - Aspartate aminotransferase (EC 2.6.1.1), at 379,043 to 380,218
GFF1066
GFF1067 - Hydrolase, alpha/beta fold family, at 380,230 to 381,111
GFF1067
GFF1068 - Beta-ureidopropionase (EC 3.5.1.6), at 381,114 to 382,403
GFF1068
GFF1069 - hypothetical protein, at 382,400 to 383,335
GFF1069
GFF1070 - no description, at 383,399 to 383,665
GFF1070
Position (kb) 381
382
383 Strain fitness (log2 ratio) -2
-1
0
1 at 380.266 kb on + strand at 380.267 kb on - strand at 380.269 kb on + strand at 380.269 kb on + strand at 380.597 kb on - strand, within GFF1067 at 380.913 kb on - strand, within GFF1067 at 380.913 kb on - strand, within GFF1067 at 381.144 kb on - strand at 381.144 kb on - strand at 381.144 kb on - strand at 381.144 kb on - strand at 381.265 kb on + strand, within GFF1068 at 381.266 kb on - strand, within GFF1068 at 381.340 kb on + strand, within GFF1068 at 381.341 kb on - strand, within GFF1068 at 381.436 kb on + strand, within GFF1068 at 381.715 kb on - strand, within GFF1068 at 381.728 kb on + strand, within GFF1068 at 381.859 kb on - strand, within GFF1068 at 382.371 kb on + strand at 382.644 kb on - strand, within GFF1069 at 382.709 kb on + strand, within GFF1069 at 382.709 kb on + strand, within GFF1069 at 382.710 kb on - strand, within GFF1069 at 382.710 kb on - strand, within GFF1069 at 383.107 kb on + strand, within GFF1069 at 383.108 kb on - strand, within GFF1069 at 383.350 kb on + strand at 383.350 kb on + strand at 383.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 380,266 + -1.3 380,267 - -0.3 380,269 + -2.5 380,269 + -0.9 380,597 - GFF1067 0.42 -0.7 380,913 - GFF1067 0.77 -0.4 380,913 - GFF1067 0.77 +1.3 381,144 - -0.2 381,144 - -0.4 381,144 - -0.4 381,144 - +0.8 381,265 + GFF1068 0.12 -0.7 381,266 - GFF1068 0.12 -0.6 381,340 + GFF1068 0.18 +0.3 381,341 - GFF1068 0.18 -1.0 381,436 + GFF1068 0.25 -0.6 381,715 - GFF1068 0.47 -1.0 381,728 + GFF1068 0.48 -0.4 381,859 - GFF1068 0.58 +0.3 382,371 + -0.0 382,644 - GFF1069 0.26 -0.6 382,709 + GFF1069 0.33 +0.0 382,709 + GFF1069 0.33 -0.2 382,710 - GFF1069 0.33 -1.3 382,710 - GFF1069 0.33 -0.8 383,107 + GFF1069 0.76 -0.7 383,108 - GFF1069 0.76 -0.4 383,350 + -0.6 383,350 + -0.9 383,351 - +0.3
Or see this region's nucleotide sequence