Strain Fitness in Variovorax sp. SCN45 around GFF1016

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1014 and GFF1015 are separated by 36 nucleotidesGFF1015 and GFF1016 are separated by 68 nucleotidesGFF1016 and GFF1017 are separated by 4 nucleotides GFF1014 - Arylesterase precursor (EC 3.1.1.2), at 333,028 to 333,666 GFF1014 GFF1015 - ABC-type antimicrobial peptide transport system, ATPase component, at 333,703 to 334,413 GFF1015 GFF1016 - no description, at 334,482 to 334,961 GFF1016 GFF1017 - conserved hypothetical protein-transmembrane prediction, at 334,966 to 335,946 GFF1017 Position (kb) 334 335Strain fitness (log2 ratio) -1 0 1at 333.518 kb on - strand, within GFF1014at 333.545 kb on + strand, within GFF1014at 333.545 kb on + strand, within GFF1014at 333.546 kb on - strand, within GFF1014at 333.546 kb on - strand, within GFF1014at 333.546 kb on - strand, within GFF1014at 333.546 kb on - strand, within GFF1014at 333.546 kb on - strand, within GFF1014at 333.669 kb on + strandat 333.669 kb on + strandat 333.669 kb on + strandat 333.669 kb on + strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 333.670 kb on - strandat 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.300 kb on - strand, within GFF1015at 334.300 kb on - strand, within GFF1015at 334.383 kb on + strandat 334.383 kb on + strandat 334.383 kb on + strandat 334.383 kb on + strandat 334.400 kb on + strandat 334.423 kb on + strandat 334.428 kb on + strandat 334.448 kb on + strandat 334.449 kb on - strandat 334.452 kb on + strandat 334.452 kb on + strandat 334.459 kb on + strandat 334.459 kb on + strandat 334.459 kb on + strandat 334.460 kb on - strandat 334.460 kb on - strandat 334.461 kb on + strandat 334.461 kb on + strandat 334.461 kb on + strandat 334.462 kb on - strandat 334.465 kb on + strandat 334.465 kb on + strandat 334.465 kb on + strandat 334.466 kb on - strandat 334.466 kb on - strandat 334.605 kb on + strand, within GFF1016at 334.606 kb on - strand, within GFF1016at 334.606 kb on - strand, within GFF1016at 334.787 kb on + strand, within GFF1016at 334.838 kb on - strand, within GFF1016at 334.838 kb on - strand, within GFF1016at 334.838 kb on - strand, within GFF1016at 334.887 kb on + strand, within GFF1016at 334.887 kb on + strand, within GFF1016at 335.161 kb on + strand, within GFF1017at 335.161 kb on + strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.240 kb on - strand, within GFF1017at 335.333 kb on + strand, within GFF1017at 335.545 kb on + strand, within GFF1017at 335.545 kb on + strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.891 kb on + strandat 335.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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333,518 - GFF1014 0.77 +0.3
333,545 + GFF1014 0.81 -1.3
333,545 + GFF1014 0.81 -0.1
333,546 - GFF1014 0.81 -0.6
333,546 - GFF1014 0.81 +0.1
333,546 - GFF1014 0.81 +0.1
333,546 - GFF1014 0.81 -0.3
333,546 - GFF1014 0.81 +0.6
333,669 + +0.3
333,669 + -1.4
333,669 + -0.1
333,669 + -0.6
333,670 - -0.8
333,670 - +0.2
333,670 - -0.5
333,670 - -1.5
333,670 - -0.0
333,670 - -0.5
333,670 - -0.3
333,670 - -0.3
333,670 - -0.1
333,670 - +0.4
334,299 + GFF1015 0.84 +0.5
334,299 + GFF1015 0.84 -0.5
334,299 + GFF1015 0.84 +0.8
334,299 + GFF1015 0.84 -1.3
334,299 + GFF1015 0.84 +0.2
334,299 + GFF1015 0.84 -0.3
334,299 + GFF1015 0.84 -0.3
334,299 + GFF1015 0.84 -0.3
334,299 + GFF1015 0.84 +0.0
334,299 + GFF1015 0.84 +0.0
334,300 - GFF1015 0.84 -1.1
334,300 - GFF1015 0.84 -0.1
334,383 + +0.2
334,383 + +0.7
334,383 + -0.4
334,383 + -0.4
334,400 + +0.1
334,423 + -0.3
334,428 + +0.0
334,448 + +0.0
334,449 - -0.6
334,452 + -0.8
334,452 + -1.3
334,459 + -0.0
334,459 + -0.5
334,459 + -0.2
334,460 - -0.9
334,460 - -0.1
334,461 + -0.0
334,461 + -0.2
334,461 + -0.3
334,462 - -0.5
334,465 + -0.3
334,465 + +0.9
334,465 + +0.1
334,466 - -0.4
334,466 - -0.1
334,605 + GFF1016 0.26 -0.1
334,606 - GFF1016 0.26 -0.9
334,606 - GFF1016 0.26 -0.8
334,787 + GFF1016 0.64 -0.2
334,838 - GFF1016 0.74 +0.1
334,838 - GFF1016 0.74 -1.2
334,838 - GFF1016 0.74 -0.2
334,887 + GFF1016 0.84 -0.5
334,887 + GFF1016 0.84 -0.3
335,161 + GFF1017 0.20 +0.1
335,161 + GFF1017 0.20 -0.5
335,162 - GFF1017 0.20 -0.1
335,162 - GFF1017 0.20 -1.3
335,162 - GFF1017 0.20 -0.6
335,240 - GFF1017 0.28 -0.1
335,333 + GFF1017 0.37 -0.5
335,545 + GFF1017 0.59 +1.3
335,545 + GFF1017 0.59 +0.5
335,546 - GFF1017 0.59 +0.0
335,546 - GFF1017 0.59 -0.1
335,546 - GFF1017 0.59 -1.2
335,650 + GFF1017 0.70 +0.4
335,650 + GFF1017 0.70 -0.3
335,650 + GFF1017 0.70 -0.7
335,650 + GFF1017 0.70 +0.2
335,650 + GFF1017 0.70 -0.3
335,651 - GFF1017 0.70 +0.3
335,651 - GFF1017 0.70 -1.0
335,651 - GFF1017 0.70 -0.5
335,651 - GFF1017 0.70 +0.1
335,651 - GFF1017 0.70 +0.1
335,651 - GFF1017 0.70 -0.7
335,651 - GFF1017 0.70 -0.5
335,891 + +0.6
335,892 - +0.5

Or see this region's nucleotide sequence