Strain Fitness in Erwinia amylovora T8 around OLJFJH_10795

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10790 and OLJFJH_10795 are separated by 46 nucleotidesOLJFJH_10795 and OLJFJH_10800 are separated by 209 nucleotidesOLJFJH_10800 and OLJFJH_10805 are separated by 75 nucleotides OLJFJH_10790: OLJFJH_10790 - oxygen-dependent coproporphyrinogen oxidase, at 2,254,684 to 2,255,592 _10790 OLJFJH_10795: OLJFJH_10795 - N-acetylmuramoyl-L-alanine amidase AmiA, at 2,255,639 to 2,256,505 _10795 OLJFJH_10800: OLJFJH_10800 - GNAT family acetyltransferase, at 2,256,715 to 2,257,140 _10800 OLJFJH_10805: OLJFJH_10805 - DUF2919 domain-containing protein, at 2,257,216 to 2,257,680 _10805 Position (kb) 2255 2256 2257Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2255.624 kb on + strandat 2255.625 kb on - strandat 2255.625 kb on - strandat 2255.945 kb on + strand, within OLJFJH_10795at 2255.945 kb on + strand, within OLJFJH_10795at 2255.945 kb on + strand, within OLJFJH_10795at 2255.945 kb on + strand, within OLJFJH_10795at 2255.945 kb on + strand, within OLJFJH_10795at 2255.949 kb on + strand, within OLJFJH_10795at 2255.949 kb on + strand, within OLJFJH_10795at 2255.987 kb on - strand, within OLJFJH_10795at 2256.112 kb on + strand, within OLJFJH_10795at 2256.112 kb on + strand, within OLJFJH_10795at 2256.113 kb on - strand, within OLJFJH_10795at 2256.166 kb on + strand, within OLJFJH_10795at 2256.166 kb on + strand, within OLJFJH_10795at 2256.167 kb on - strand, within OLJFJH_10795at 2256.555 kb on - strandat 2256.575 kb on - strandat 2256.618 kb on - strandat 2256.678 kb on + strandat 2256.690 kb on + strandat 2256.786 kb on - strand, within OLJFJH_10800at 2256.822 kb on + strand, within OLJFJH_10800at 2256.925 kb on + strand, within OLJFJH_10800at 2256.925 kb on + strand, within OLJFJH_10800at 2256.926 kb on - strand, within OLJFJH_10800at 2257.082 kb on - strand, within OLJFJH_10800at 2257.159 kb on + strandat 2257.159 kb on + strandat 2257.175 kb on + strandat 2257.211 kb on - strandat 2257.242 kb on - strandat 2257.246 kb on + strandat 2257.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-4
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2,255,624 + +1.2
2,255,625 - -0.2
2,255,625 - +0.2
2,255,945 + OLJFJH_10795 0.35 -0.8
2,255,945 + OLJFJH_10795 0.35 +3.4
2,255,945 + OLJFJH_10795 0.35 -1.3
2,255,945 + OLJFJH_10795 0.35 -0.7
2,255,945 + OLJFJH_10795 0.35 -0.5
2,255,949 + OLJFJH_10795 0.36 -0.8
2,255,949 + OLJFJH_10795 0.36 +4.1
2,255,987 - OLJFJH_10795 0.40 -1.1
2,256,112 + OLJFJH_10795 0.55 +0.2
2,256,112 + OLJFJH_10795 0.55 -0.9
2,256,113 - OLJFJH_10795 0.55 +0.0
2,256,166 + OLJFJH_10795 0.61 +0.9
2,256,166 + OLJFJH_10795 0.61 -0.5
2,256,167 - OLJFJH_10795 0.61 +1.4
2,256,555 - -0.1
2,256,575 - -0.4
2,256,618 - +1.2
2,256,678 + -1.3
2,256,690 + -1.4
2,256,786 - OLJFJH_10800 0.17 -1.2
2,256,822 + OLJFJH_10800 0.25 -0.0
2,256,925 + OLJFJH_10800 0.49 -0.5
2,256,925 + OLJFJH_10800 0.49 +0.8
2,256,926 - OLJFJH_10800 0.50 -0.3
2,257,082 - OLJFJH_10800 0.86 -1.6
2,257,159 + -2.2
2,257,159 + -1.6
2,257,175 + -1.4
2,257,211 - -1.4
2,257,242 - -1.4
2,257,246 + +0.7
2,257,262 - -1.1

Or see this region's nucleotide sequence